Ferruginibacter lapsinanis: LK994_14405
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Entry
LK994_14405 CDS
T07839
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flp
Ferruginibacter lapsinanis
Pathway
flp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LK994_14405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flp03019
]
LK994_14405
03009 Ribosome biogenesis [BR:
flp03009
]
LK994_14405
Enzymes [BR:
flp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LK994_14405
Messenger RNA biogenesis [BR:
flp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LK994_14405
Ribosome biogenesis [BR:
flp03009
]
Prokaryotic type
rRNA helicases
LK994_14405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
SNF2-rel_dom
SPP1_GP23-1
Motif
Other DBs
NCBI-ProteinID:
UEG49830
LinkDB
All DBs
Position
3423679..3425451
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AA seq
590 aa
AA seq
DB search
MNAFQALGLNEQLVQAVTDLGFENPTPIQEQAIPVLLSGTMDFVGLAQTGTGKTAAFGLP
LLQLINIADKHPQALIVCPTRELCLQITKDLEVFTKHTRGLKMEAVYGGASISMQIRNLR
NGVHIVVATPGRLIDLIERKAIDLQKVKYVVLDEADEMLNMGFRDDIDFVLKNTVNRESI
WLFSATMPPEVRAISKNFMTNPKEITVGKKNSGNVNIDHQFMTVAAHQRYEALKRVIDFN
PGMYGIIFTRTKLDAQDIAEKLTREGYEIEALHGDLTQQQRDKVMGRFRTKHLQLLIATD
VAARGIDVDGVTHVINYELPDDIEVYTHRSGRTARAGKTGICLSITHSRETFKIRQLEKM
VNSQFHKIDAPSGKEVCRKQFFHFMEKLMSADISHGDYETYMGDLQTKFADVTKEEILQR
VAALEFSHFLKYYENAQDLNSNTRGEFRDRRDSGNTRDGRSDSRDSGSRRERSNSNQRDN
GYTRLFINLGTKDGFYKASFLQFILDESSLNKEVLGRIDMKEMNSWVEIDKAAAGKMIKS
IDGKKHNGRQIRMNEADGGFRRPNDEGRGAGGDRSDRGGERKRIPMRDKR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcatttcaagccttaggcttaaacgaacaattagtacaagccgtaaccgatctt
ggcttcgaaaaccccactccgattcaagaacaagctatccctgttttattatcaggtaca
atggattttgttggattagcacaaacaggtacaggtaaaactgctgcttttggtttacca
ttactacaattgatcaacattgctgataaacatccgcaggctttgatcgtttgtcctaca
agagaactttgtttacaaattacaaaagatttagaagtatttacaaaacataccagagga
ttaaaaatggaagctgtatatggtggtgcttctatctcaatgcagatacgcaatttgcgt
aacggtgtccacatcgttgttgcgactccgggcagattaattgatctgatcgaacgcaaa
gcgatcgatctgcaaaaagtaaaatatgtagtattagatgaggccgatgagatgttgaac
atgggctttagagatgatattgatttcgttttaaagaatactgttaacagagaaagtatt
tggttattcagtgctactatgcccccagaagttagagcgatctctaagaactttatgacc
aatcctaaagaaatcacggttggtaaaaagaatagcggtaacgtaaatattgatcatcaa
ttcatgaccgtagctgctcaccagcgttatgaagctttgaagagagtgattgattttaat
cctggtatgtacggtattatttttacccgtactaaattagatgcacaggatattgctgaa
aaattaacaagagaaggatacgaaattgaagcgttgcatggtgatcttacgcagcaacaa
agagataaagtaatgggcaggttccgtaccaaacatttgcaattattaattgctacagat
gtggctgcccgtggtattgacgttgatggcgttacacatgttatcaattacgaattaccc
gatgatattgaagtgtacacacatagaagtggccgtacagcacgtgcaggcaaaacaggt
atttgtttatcgatcactcatagcagagaaacattcaagatcagacaattggagaaaatg
gtgaattctcaattccataaaatagatgctccaagtggtaaagaagtttgtcgcaaacaa
ttctttcatttcatggaaaaattaatgagtgcagacatttctcatggtgattacgaaact
tacatgggtgatctgcaaacaaaatttgccgatgtaacaaaagaagaaattttacaaaga
gtagctgccttagaatttagccactttttgaaatactatgaaaatgcgcaggatctgaac
tcaaacacaagaggggaattcagagacagaagagatagcggaaataccagagacggaaga
tctgatagcagagatagcggaagcagaagagaaagaagcaattctaatcaacgtgacaat
ggatatacaagattatttatcaatctgggtaccaaagacggtttttacaaagccagtttc
ttacaatttatcctggatgaaagcagcttgaataaagaagtgctcggcagaatagatatg
aaagaaatgaacagttgggtagaaattgacaaagcagctgccggtaaaatgatcaaaagt
attgacggtaaaaagcataatggtcgccagatacgtatgaatgaggctgatggaggattt
agaaggccaaatgacgaaggtagaggcgccggtggagacagaagcgacagaggcggtgaa
agaaaaagaatcccgatgagggacaagagataa
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