Flavobacterium sp. WV_118_3: ABFU83_09840
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Entry
ABFU83_09840 CDS
T10639
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flr Flavobacterium sp. WV_118_3
Pathway
flr03018
RNA degradation
Brite
Enzymes [BR:
flr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABFU83_09840
Messenger RNA biogenesis [BR:
flr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABFU83_09840
Ribosome biogenesis [BR:
flr03009
]
Prokaryotic type
rRNA helicases
ABFU83_09840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
MatB
RRM_5
Motif
Other DBs
NCBI-ProteinID:
XBB74332
LinkDB
All DBs
Position
2104405..2106273
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AA seq
622 aa
AA seq
DB search
MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPLLLEKDTDIVALAQTGTGKTAAFGFP
LIQKIDAEDRTTQALILSPTRELCLQITNEIKQYSKYVKGIHTVAVYGGASITEQAKDVK
RGAQIIVATPGRMQDMINRGMVNIKNINFCILDEADEMLNMGFYDDITSILSDTPENKST
WLFSATMPQEVARIAREFMRKPLEITVGHKNSGSQNVSHEFYLVNARDRYSALKRLADAN
PDIFSVIFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGTSMVIITKSELRKISQIERI
IKTKFEEKPIPSGIEICEIQLFHLANKIKDVEVDHEIDAYLPAIYEVMKDLTKEEVIKKM
VSVEFNRFINYYKKSRDLSAQNAGDRREDAGSIPSDGAVRFFINIGSRDNYDWMTLKDFL
RDTLELGRDDLFKVDVKEGFSFFNTDAEHAEKVMDVLNNIHLEGRKINVEISKNDGGSNN
RRRDHNGRNSGGDRNRSRGGDRDRGGDRDRGPRKERSFGGGRSERKDDFGDRPLRNERRS
DRSPRRSEGSSNNSSGRRPRRS
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgctactgctggcgattaaagatcta
ggatttgaaaatccgtcggaggtacaggaaaaggcgattcccctattattggaaaaagac
acagacatagttgcattggcacagaccgggacaggtaagaccgctgcgtttggttttcca
ctgattcaaaagattgatgctgaggatagaacgactcaggcattaattttatcgccaaca
cgcgaactttgtttacaaatcaccaatgagattaaacaatattcaaaatacgttaaagga
attcacactgttgccgtttatggtggtgccagcattaccgaacaggcgaaagatgtaaaa
agaggcgcacagattatcgtggccactccaggaagaatgcaagacatgattaacagaggt
atggtaaatatcaagaacattaatttctgtattcttgacgaagccgacgaaatgttaaac
atgggattttatgatgatatcacttccattttatccgatacaccggaaaacaaaagtacc
tggttgttttcggcaaccatgccacaggaagtagcgcgtattgcacgcgagtttatgcgt
aaaccccttgaaattacagtgggacacaaaaactctggttcgcaaaacgtttcgcacgaa
ttttacctggtaaatgcccgcgatcgttattcggccttaaaacgactggctgatgctaac
ccggatattttctcggttatcttctgccgtaccaaaagagacacacaagctgttgctgaa
aaactaatcgaagacggatacaatgctgctgctttacacggtgacctttctcaggcacaa
cgtgacggcgtaatgaaatcgttccgtggtcgtcagatccaaatgttggttgctaccgac
gtagcggctcgtggtattgacgtagatgatattacacacgtaatcaactatcagctacca
gacgaaatcgaaacgtatacacaccgttccggtagaacaggtcgtgccggaaaatccgga
acatctatggtgatcatcacgaaaagtgaattgcgtaaaatttcacagatcgagcgtatc
atcaaaacgaaattcgaagaaaaaccgattccttccggaattgaaatctgcgaaattcag
ttattccacttagcgaataaaatcaaagacgttgaagttgaccatgaaatcgatgcctat
cttcccgctatttatgaggtaatgaaagaccttacaaaagaggaagtaatcaagaaaatg
gtttcggtagaattcaaccgttttatcaattactataagaaatctcgcgatttatcagct
caaaatgctggcgaccgtcgtgaagacgcaggaagtatcccgtctgacggagcagtacgt
ttctttatcaacatcggttcccgtgataattatgactggatgacgttgaaagatttctta
cgtgacactttagaattaggtcgtgacgatttgtttaaagtggatgtaaaagaaggtttc
tctttctttaatactgatgcggaacatgccgagaaagtaatggatgttttaaacaacatt
catttagaaggacgtaaaatcaacgtggaaatttctaaaaacgacggtggatccaacaac
agaagacgtgaccataacggacgtaacagtggtggtgatcgcaaccgttcccgaggtggt
gaccgcgacagaggtggcgatcgcgacagaggaccaagaaaagagcgtagttttggcggt
ggtcgttcggaaagaaaagatgattttggtgaccgaccattacgaaatgaaagaagatca
gaccgttctccgcgtcgttccgaaggttcttcgaacaacagcagcggaagacgccccaga
agaagctaa
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