Flavobacterium sp. WV_118_3: ABFU83_11140
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Entry
ABFU83_11140 CDS
T10639
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
flr Flavobacterium sp. WV_118_3
Pathway
flr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABFU83_11140 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flr03019
]
ABFU83_11140 (rny)
Messenger RNA biogenesis [BR:
flr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABFU83_11140 (rny)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
DUF4407
Motif
Other DBs
NCBI-ProteinID:
XBB74586
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All DBs
Position
2371614..2373179
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AA seq
521 aa
AA seq
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MSTTLIIIICCIAGTGIGFGIAKYLEKINASTLIKNAKSEAASLIKDAKTEGEAIKKDKI
LQAKEKFIELKAEHEQVILGRDKKIAEAEKRTRDKESQVSNELAKAKKSNDELENKITDY
NNRIDVLDKKQAEIEKLHKSQVEQLEVISGLSAEEAKNQLVESLRADAKSSAMSHIQETI
EEAKLTAHQEARKIIINTIQRIGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAA
TGVEIIVDDTPEAIILSCFDPVRREIARLALHKLVTDGRIHPARIEEVVAKTAKQIDDEI
IEVGKRTVIDLGIHGLHPELIKIVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNVK
LAKRAGLLHDIGKVPETESELPHAILGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLIAPI
IQVCDAISGARPGARRQVLDSYIQRLKDLEEIAYGFNGVKNAYAIQAGRELRVIVESEKV
SDEMASTLSFDISQKIQTEMTYPGQVKITVIRETRAVNIAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaacacttataataattatttgctgtattgcaggaacaggaatcggttttgga
attgctaagtatttagaaaaaatcaatgcttccacattgattaaaaatgcaaaaagtgaa
gcagcttccctgataaaagacgctaaaacagaaggtgaagcgatcaaaaaagataaaatt
cttcaggcgaaggaaaaattcattgaattaaaagcagaacacgaacaggtaattttaggt
cgcgacaaaaaaattgccgaagctgagaaaagaacccgcgacaaagaatcacaggtatcg
aacgagctggctaaagccaaaaaaagcaacgatgaactggaaaacaaaattaccgattac
aacaaccgtattgatgttcttgataaaaagcaagccgaaatcgaaaagcttcataaaagt
caggtagaacaactggaagtcatttccggtctttctgccgaggaagctaaaaatcaattg
gtagaaagcctgcgtgcagatgcaaaatcgagtgcaatgtcgcatattcaggaaacaatt
gaagaagcgaaattaaccgcacatcaggaggcgagaaaaatcatcatcaacacgattcag
cgtattggtacggaagaagctgttgaaaactgcgtttcggtattcaatattgaatccgac
gatgttaaaggtcgtattatcggacgtgaaggtcgtaatatccgcgccctggaagccgct
accggagtcgaaatcatcgtagatgatacccctgaagcgattatcctttcctgttttgac
ccggttcgccgtgaaattgcccgtcttgcattacacaaactggtaaccgacggtcgtatt
cacccggcacgtatcgaagaagtagtcgctaaaacggcgaaacaaattgacgacgagatt
atcgaagtgggtaaacgtaccgttatcgatttaggtatccacggtttacatccggagctt
atcaaaatcgttggacgtatgaaataccgttcgtcttacggacaaaacctgttacaacac
tcgagagaagttgccaaactttgtggtgttatggctgctgaattaggattaaacgtaaaa
ctagccaaaagagctggtttattacacgatatcggaaaagtaccggaaaccgaaagcgaa
ctgccacacgctatcttagggatgcagtgggcggagaaatacggcgaaaaagaagaggtt
tgcaacgctattggagcacaccacgacgagattgaaatgaaatcgcttatcgcaccgatt
attcaggtttgtgatgctatttcgggagcacgaccaggtgcaagacgtcaggtattggat
tcctatatccaacgtctgaaagatcttgaagaaatcgcttacggatttaacggtgttaaa
aacgcttatgcgatccaggccggacgtgagttacgggtaatcgtagaaagtgaaaaagtg
agcgacgaaatggcttctacgctatcgttcgatatttcacagaaaattcaaacggaaatg
acgtatccgggtcaggtaaaaattaccgtaatccgtgaaaccagagcggttaatattgcc
aaataa
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