Flavobacterium sp. WV_118_3: ABFU83_15845
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Entry
ABFU83_15845 CDS
T10639
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
flr Flavobacterium sp. WV_118_3
Pathway
flr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
flr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABFU83_15845 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
flr03400
]
ABFU83_15845 (mfd)
Enzymes [BR:
flr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABFU83_15845 (mfd)
DNA repair and recombination proteins [BR:
flr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABFU83_15845 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Motif
Other DBs
NCBI-ProteinID:
XBB75476
LinkDB
All DBs
Position
complement(3384905..3388267)
Genome browser
AA seq
1120 aa
AA seq
DB search
MKNDIVTLYEKSPKINQLAEQLQKREEKIHLKGLIGSSLSFVVQLLFQKSDLPFLLLFQD
KEEAAYYLNDLENLINDQDVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPSII
VSYADAIFEKVVTRKELDKNTLKVTTGDNISIDFINEVLFEYNFKRVDFVSEPGEFSVRG
GIVDVFSFSNDNPYRIEFFGNEVDSIRTFDVETQLSVEKQKKITIIPNVENKFLKENRES
FLDYISPQTVIFIQNTDLLLSRLDKLFEKANEAFQKLSSEIQHVSPENMFLNQQSFVKRS
LDFTIVELASKPIYRTQKTVEFHTQPQPSFNKQFDLLLNNLNDNHFNGYKNYLFCSNEGQ
AKRFHDIFESLDETNHEDIRKQYKTIVSPLYQGFIDDENRIACYTDHQIFERYHKFNLKN
GYSKKQTITLKELTTLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVYV
SIHSLHKISKYNGKDGAPPKIYKLGSSAWKTLKQKTKARVKHIAFNLIQLYAKRRLDKGF
AFAPDSYLQAELESSFIYEDTPDQLKATQDVKADMENDRPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAILVPTTILAFQHYKTFRDRLKDMPVNVNYINRFRTAKQKTEILKELED
GKLDIIIGTHQLVNKNVVFKNLGLLIIDEEQKFGVAVKDKLKTIAQNVDTLTLTATPIPR
TLQFSLMAARDLSVITTPPPNRYPIETHVVGFNEEVIRDAVSYEIERGGQVYFINNRIEN
IKEVAGMIQRLVPGARVGVGHGQMDGKKLEELMLAFMDGEFDVLVATTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSELGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEDNDI
ETKEYVKDIQIDTDFELLFPDEYINNISERLNLYNELSVIKTDADLQVYEQKLIDRFGPL
PRQAVALLNSIRIKWIATSIGIEKLVLKQGKMVGYFVADQQSDFYQSNRFHKVLRFVQQQ
GNLCKMKEKETKNGLRLLLTFENVKSIKRALELMEMMHQN
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaacgatattgtaaccttatacgaaaaatcgcccaagattaaccaattggcggaa
caacttcaaaaaagagaagaaaagatccatctaaaaggattgatcggatcgtcgctttcg
tttgttgttcaattgctttttcagaagagcgatttaccttttttactgcttttccaggac
aaggaagaagcggcctattatctgaatgatcttgaaaatctgatcaacgatcaggatgtt
ttattttatcccggttcctaccgtcgtccgtatcagattgaagaaaccgacaacgccaat
gttttacttcgcgccgaagtactcaaccgaattaactcgcgcaaaaagccctcgattatc
gtttcgtatgccgatgcgattttcgaaaaagtcgtaacccgtaaggaactcgacaaaaac
accttaaaagtcaccaccggtgacaacatctcgatcgactttatcaacgaggtgcttttt
gaatacaacttcaaacgcgtggatttcgtatcggaaccaggcgaattttcggttcgcggt
ggtattgttgacgttttttcattttcgaacgacaatccataccgaatcgagtttttcgga
aacgaagtcgacagtattcgtacgtttgatgtcgaaacccagttatcggtcgaaaaacaa
aaaaagatcacgattattccgaatgtcgagaataaatttctaaaagaaaatcgcgaaagc
ttcctggactatataagtccgcaaacggtaatttttatccagaacaccgatttattgtta
agccgactggacaaattattcgaaaaagccaacgaagcctttcaaaaattgtcatcggaa
attcagcatgtatcgcccgaaaacatgttcctgaaccaacaatcctttgtaaaaagatca
ttggattttacgattgtggaactggcttcgaaaccgatctaccgaacccagaaaacggtc
gaattccacacacaaccacaaccgtcgtttaacaagcagtttgatttgttattaaacaac
ctgaacgacaatcatttcaacggttataaaaactaccttttctgttccaacgaaggtcag
gcaaagcgttttcacgacattttcgaatcgctggacgaaacgaatcacgaagacatccgc
aaacaatacaaaaccatcgtttcgcctttataccagggatttatcgacgatgaaaaccgg
attgcctgttataccgaccatcagatttttgaacggtaccataagtttaatctgaaaaac
ggttattcaaaaaaacagaccatcaccttaaaagaactgaccaccttatccgttggcgat
tatgttacccatattgaccacggcattggaaaatttggcggtttacaaaaaattcaggtc
gaaggcaaaacccaggaagccattaaactggtgtatgccgataacgacattgtgtatgtg
agcattcattccttacataaaatatccaaatacaacggaaaagacggtgcgccacccaaa
atatacaaactgggatcgagcgcctggaaaaccttaaaacaaaaaaccaaagcccgggtt
aagcacattgcgtttaacctgattcaattatacgccaaacgccgactggataaaggtttt
gcctttgcacccgacagctatctacaggccgaactggaaagttcttttatttatgaggac
accccggatcagttaaaagccactcaggatgtaaaagccgatatggaaaacgaccgtccg
atggatcgtctggtctgtggtgacgtaggtttcggaaaaacggaagttgcgatccgtgcc
gcctttaaagctgtagacaacggtaaacaggttgcgattctggtaccgacaactattttg
gcctttcagcattataaaaccttccgcgaccggttaaaagatatgccggttaatgtgaat
tatattaaccgattccgtactgccaagcaaaaaaccgagatcctgaaagaactcgaagac
ggtaaactggacattattatcggaacccaccagttggtgaacaaaaatgtggtatttaaa
aaccttggtttattaattatcgacgaagaacaaaaattcggcgtagcggtaaaagacaaa
ctcaagacgatcgcccagaatgttgatacgcttaccttaacggcgacaccgattccgagg
actttacaattttcgttaatggcggcacgagacttatcggttattaccacgccaccaccc
aatcgttatccgatcgaaacccatgtggttggctttaacgaagaagtgatccgtgatgcg
gtttcgtatgaaatcgaacgtggcggtcaggtttattttatcaacaaccgaatcgaaaat
atcaaggaagtagccggaatgattcagcgacttgttcccggtgccagagttggcgtaggc
cacggtcagatggatggaaaaaaactcgaagaactgatgcttgcttttatggatggtgaa
tttgacgtattggtcgctaccaccatcatcgaaagcggattggacgttccgaatgcgaat
acgatctttatcaacaatgccaataatttcggactatcggatctacaccagatgcgtggt
cgtgtaggacgaagcaataaaaaagcgttttgttactttatctgtccgccgtattcggca
atgacggaagaagcccgcaaacgtatccaggcgctggaacaatttagcgaactgggaagt
ggttttaatatcgcgatgaaagaccttgaaattcgtggtgccggtgatttattaggtggt
gaacaaagcgggtttatcaacgagatcggttttgacacctatcagaagatcatgaacgag
gcgatcgaggaactaaaagaaaacgaattcaaggatttatatccggaagacaacgatatc
gaaaccaaggaatacgtaaaagacatccagatcgacaccgattttgagcttttattcccg
gacgaatacatcaacaatatttcggaacgtctgaatttgtataacgagctgagtgttatc
aaaaccgacgccgatttacaggtttacgaacaaaaactgatcgaccgtttcggcccttta
ccgagacaagcagtcgctttactgaacagcatccgtatcaagtggattgcaaccagtatt
ggtattgaaaaactggttttaaaacaaggtaagatggtgggttattttgtagccgatcaa
caatcggatttttaccagtcaaatcgttttcataaagtactacgttttgtacaacaacag
ggtaatttatgtaagatgaaagaaaaagaaaccaaaaatggccttcgcctgttactgacg
ttcgagaatgtaaaatcgatcaaacgggctttggaattaatggaaatgatgcatcaaaat
taa
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