Phnomibacter ginsenosidimutans: GLV81_08090
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Entry
GLV81_08090 CDS
T06320
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fls
Phnomibacter ginsenosidimutans
Pathway
fls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLV81_08090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fls03019
]
GLV81_08090
03009 Ribosome biogenesis [BR:
fls03009
]
GLV81_08090
Enzymes [BR:
fls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GLV81_08090
Messenger RNA biogenesis [BR:
fls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GLV81_08090
Ribosome biogenesis [BR:
fls03009
]
Prokaryotic type
rRNA helicases
GLV81_08090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SNF2-rel_dom
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QGW28063
UniProt:
A0A6I6G967
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All DBs
Position
1875929..1877578
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AA seq
549 aa
AA seq
DB search
MSDFSTLGLNDQLLAGIVKLGFETPTEIQTKAIPLLLQGTRDFVGLAQTGTGKTAAFGLP
LLHLIDKTQKHAQALVVCPTRELCMQIVKDLEAFGKAGGGAKVCAVYGGTSITQQIRDLR
HGVQIVVATPGRLIDLIERKAIDLTKIGYVVLDEADEMLNMGFKEDIDFILEYTPNRNSM
WLFSATMPPEIRNVAKRFMNQPVEVSVGKMNTTNVNIDHQYFVTAQPHRYEALKRLIDFN
PDIYGIIFTRTKMDAQEISDRLTREGYNVDSLHGDLSQQQRDRVMNGFRSKALQLVIATD
VAARGIDVSGITHVINFELPDDVEVYTHRSGRTGRAGKTGICLSIVTARDVRRIRDIEHI
VKTKMNRLEIPSGKDVCRKQFFHFMDKLLATDISHGDYETYLPMLTEKFANVSKEEVLQR
VAALEFDRFLKYYENAVDLNIKKTPERPMAGAGDRKPFERRDTKGRSFEGGGGNYQKVFV
NLGTKDGFYKASFLQYILDLSDLRKDVLGRVDLKTMNSFVEVDKQHVKKMIKAIDGKTYK
GRKIRMNEA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgagtgactttagcacattgggcctgaatgaccaactccttgccggtattgtaaagctt
ggatttgaaacgccaactgaaattcaaacaaaagcaattccgctgttgctgcagggaacc
cgcgactttgtaggtcttgcacagaccggtactggtaaaacagcagcatttggtttgcct
ttgctgcacctgattgacaaaacacagaaacatgcacaggcattggtggtttgccccacc
cgtgagttgtgtatgcaaattgtaaaagaccttgaggcctttggcaaagccggtggtggt
gccaaggtttgtgcggtgtatggtggtacttccatcacacagcaaattcgtgatctgcgc
cacggtgtgcagattgttgttgctacccctggtcgcctcatcgaccttatcgaacgcaaa
gctattgaccttaccaagattggctatgtagtgttggatgaagcggatgaaatgctgaac
atgggtttcaaagaagatatcgatttcattttggaatacacacccaaccgcaatagtatg
tggttgttcagcgctaccatgccaccagaaattcgcaatgtggccaagcgttttatgaac
cagccggtggaagtgagtgtaggcaaaatgaatactaccaacgtcaacatcgaccaccag
tattttgtgacggcacaaccgcaccgttacgaagcattgaagcgtttgattgatttcaat
cctgacatctacggcatcatttttacccgcaccaaaatggatgcacaggaaatttctgac
cgcctaaccagagaaggttacaacgtagattctctgcatggcgatttgagccagcagcaa
cgcgaccgggtaatgaacggctttcgtagcaaggctttacagctggtaattgccaccgac
gtagctgcccgtggtatcgacgtgtccggcattacgcatgtcatcaatttcgaactgccc
gatgatgtggaagtatatacacaccgcagtggtcgtaccggccgtgctggtaaaactggt
atatgcctgagcatcgttactgcacgtgacgttcgtcgcatccgcgatattgaacacatc
gtgaaaacgaagatgaaccgtttggaaattccttcgggtaaagacgtttgccgcaagcag
ttcttccatttcatggacaaactccttgctacagacattagccatggcgattacgaaacc
tatctgcccatgttgactgaaaagtttgccaatgtgtcgaaggaagaagtgttgcagcga
gtagcagcgttggaatttgaccgcttcctgaagtactatgaaaatgcagtagacctcaac
atcaagaaaacacctgaacgcccaatggcgggggcaggtgaccgcaaaccttttgaacgc
cgcgataccaagggccgcagttttgaaggcggtggcggtaactatcaaaaggtatttgtg
aacctcggtaccaaagacggtttttacaaagccagcttcctgcagtacattcttgacctg
agtgatttgcgcaaagatgtactgggcagggtagacctgaaaaccatgaacagctttgta
gaagtagacaagcaacacgtgaaaaagatgatcaaggccattgatggtaaaacttacaag
ggccgcaaaatcaggatgaacgaagcataa
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