Phnomibacter ginsenosidimutans: GLV81_18765
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Entry
GLV81_18765 CDS
T06320
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fls
Phnomibacter ginsenosidimutans
Pathway
fls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLV81_18765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fls03019
]
GLV81_18765
Enzymes [BR:
fls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GLV81_18765
Messenger RNA biogenesis [BR:
fls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GLV81_18765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
FIST
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QGW30124
UniProt:
A0A6I6GCC9
LinkDB
All DBs
Position
4318649..4319935
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AA seq
428 aa
AA seq
DB search
MGYQNATPVQEQVIPLIMEGRDLIASAQTGTGKTAAFLLPIIHKLLTEPRDHHSVNCLVI
VPTRELAVQISQALEGMSYFTDIGGIPVYGGGDGDLFSQEKKALSTGADIIICTPGRMIA
HLNMGYVKLHGLKYLVLDEADRMLDMGFHGDILRIINYLPKERQNLLFSATMPPKIRDLA
KKILHDPAEINIAISKPPEKIKQGAFIVYDEQKIKLVTLLLRTTPYRLAIVFCSSKESVK
RLTFDLKKAHLKVAEIHSDLEQQEREHVLLDYRNEKIKILVATDIMSRGIDIDIIDLVIN
YDVPHDGEDYVHRIGRTARAERDGTAFTLVNPRDQRKFAGIEKLLEKEVPKLPLPSDLGP
APEWKPFERREGGFGGGRGGGGKKPFRGDGKGRPQGGGGRPGGKPGGGKPGGFRPKPGGG
GGPKPPQA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggctaccaaaacgccacgccggtgcaagagcaggtaataccgctcattatggaaggc
cgcgacctgatagccagtgcccaaaccggcacgggcaaaaccgccgcctttctgttgccc
atcattcacaaactccttaccgagccacgagaccatcactccgtaaactgtttggtgatt
gtgcccacccgtgagctggcagtacaaatcagccaggcgctggaaggcatgagctacttt
accgacattggcggcatacccgtgtatggtggtggcgatggcgatttgtttagccaggaa
aaaaaagccctcagcactggtgccgacatcattatttgtacgcccggccgcatgattgcc
cacctcaacatgggttatgtaaaactgcacggactcaaatacctggtgctcgatgaagct
gaccgtatgctcgacatgggtttccacggcgatatcctccgcatcatcaactacctgccc
aaagagcggcagaacctgctgtttagtgcgaccatgccgcccaaaatccgcgacctggcc
aagaagattttgcacgacccggcagaaatcaacattgccatcagcaagccgccggaaaaa
ataaagcagggtgctttcattgtatacgatgagcaaaaaataaaactcgtaacactcttg
ttgcgcaccacgccgtaccgcttggccattgtgttttgtagtagcaaagagagtgtaaaa
cgcctcaccttcgacctgaagaaagcacacctgaaagtagccgaaatacacagcgacctg
gaacagcaggaacgggaacacgtactgctcgactatcgcaacgaaaagattaaaatactc
gtggccaccgacatcatgagccgcggtattgatatcgacatcattgatttggtgattaac
tacgacgtaccgcatgatggggaagactatgtgcaccgcattggccgtacagcccgtgcc
gaaagagatggcacggcctttaccttggtgaaccccagagaccagcgcaagtttgccggc
attgaaaaactgctggagaaagaagtgcccaagttgcccttgcccagcgaccttggcccg
gcaccggaatggaaaccgtttgaacgccgcgaaggcggctttggcggtggccgtggtggt
ggcggcaaaaagcccttccggggcgatggtaaaggcaggccgcaaggcggtggtggccgg
cccggcggtaaacctggcggcggcaagcccggtggtttccgacccaaacctggcggcggc
ggtggccctaaacctccgcaagcataa
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