Candidatus Fermentimicrarchaeum limneticum: Sv326_0112
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Entry
Sv326_0112 CDS
T06942
Name
(GenBank) Exosome complex exonuclease RRP41
KO
K11600
exosome complex component RRP41
Organism
flt
Candidatus Fermentimicrarchaeum limneticum
Pathway
flt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sv326_0112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flt03019
]
Sv326_0112
Messenger RNA biogenesis [BR:
flt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Sv326_0112
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Sv326_0112
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
QLJ52287
UniProt:
A0A7D5XP96
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All DBs
Position
125485..126225
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AA seq
246 aa
AA seq
DB search
MEKPKLIIDGKRCDGRAMDELRPLKIQAGFLNKADGSAYVEWGNNKILAAVYGPRECIPR
HDASPYRAVIHCRYLMASFSTLDEHGRSGPNRRSIEISKVLKEIFENVVITEKFPKTAID
IFIEVLQADGGTRCAGVIAAAVALADAGIPMRDLPCAVASGKIGNEVAVDFGKLEDNYGD
GDMPIAIAPRNGEILLLQLDGMFTKDELRKAVELAYGVLPKINALQVEALRTHYAVKKDE
LDFRGD
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaccaaagttaattattgatgggaaaagatgcgatggcagggcgatggatgag
ctcaggcctttgaaaatccaggctggatttttgaacaaggcggacggctctgcatatgta
gaatggggaaacaacaagatactcgcagcagtctacggtccaagagaatgcatcccaagg
catgacgccagcccctacagggcggttatccactgcaggtacctcatggcttctttctca
acgcttgacgagcacgggaggagcggccctaacaggaggtccattgagatatccaaggtg
ctaaaggagattttcgagaacgtagtcataaccgagaaattcccgaagactgcgattgac
atcttcatagaggtgttgcaggcagatggcgggactaggtgtgctggcgtaatcgctgcg
gctgttgcgttggctgacgccggaatccccatgagggatctgccctgcgcggttgcatcc
ggcaagataggcaacgaggttgctgttgattttgggaagctggaggataattacggcgat
ggtgacatgccgatagccatcgctcccaggaacggggagatactcctgctccaactggac
ggcatgttcaccaaggatgagctgaggaaggctgttgaacttgcatacggcgtgctaccc
aagataaatgcgcttcaggtagaagctctcaggacgcactatgcagtgaaaaaggatgaa
ttagattttagaggggattga
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