Candidatus Fermentimicrarchaeum limneticum: Sv326_0113
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Entry
Sv326_0113 CDS
T06942
Name
(GenBank) Exosome complex exonuclease RRP45
KO
K12589
exosome complex component RRP42
Organism
flt
Candidatus Fermentimicrarchaeum limneticum
Pathway
flt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sv326_0113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flt03019
]
Sv326_0113
Messenger RNA biogenesis [BR:
flt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Sv326_0113
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Sv326_0113
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
QLJ52288
UniProt:
A0A7D5XL37
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All DBs
Position
126227..127000
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AA seq
257 aa
AA seq
DB search
MEILDEIKKDYVTDLMKKNKRPDDREFLEYRPCTVEKGIFPFAEGSARVRLGKTQVVAGV
KIDLGTPFKDRPDEGVLSTTAELLPLASPTFEPGPPDEDAIELARIVDRGIRSSNAIDLT
SLFVEQGKVLMVFVDMYILDHDGNLIDASALAAMAALLNTRLPKIEGGQLIRTESTEKLK
VSQKVVACTFSKIDSHIVLDPGLDEVKATSARLTIATTPDYVCAIQKGGRGAFTREELFN
LVDVSFEKGNELRKLLD
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggagatactagatgagataaagaaggattatgtcacggatctgatgaagaagaacaag
aggcctgacgacagagagttcctcgagtaccggccatgcactgttgagaagggaatcttc
ccctttgcggagggcagtgccagggtcaggcttggtaaaacacaggttgtagcgggtgtg
aagatagacctaggtacccctttcaaggacagacctgacgaaggagtgctatccaccact
gcagagctgcttcctctcgcatccccaaccttcgagcccggtccgccggatgaagatgca
atcgaacttgcccggattgtggacaggggaataaggagcagcaatgcgattgacctcacg
tcacttttcgtagagcagggcaaagttctcatggtttttgttgacatgtacatcctggac
cacgacggcaatttgatagacgcgtcagcgctggctgcgatggccgccctgcttaacacc
agacttccaaaaatcgaaggaggtcagctgatcaggacagaatctaccgagaagctgaag
gtttctcagaaggttgtcgcatgcacattctcaaagatagactcccacattgtcctggat
cctgggcttgatgaggtaaaagccacgagtgccagactgacaatagcgacgactccggac
tatgtctgcgctatacagaagggaggcagaggcgctttcacgagggaagagcttttcaac
ctagttgatgtatcatttgagaaagggaatgaactcagaaagcttctggattga
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