Candidatus Fermentimicrarchaeum limneticum: Sv326_0284
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Entry
Sv326_0284 CDS
T06942
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
flt
Candidatus Fermentimicrarchaeum limneticum
Brite
KEGG Orthology (KO) [BR:
flt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
flt03016
]
Sv326_0284
Enzymes [BR:
flt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Sv326_0284
Transfer RNA biogenesis [BR:
flt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Sv326_0284
Prokaryotic type
tRNA splicing ligases
Sv326_0284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
Hint
Motif
Other DBs
NCBI-ProteinID:
QLJ52459
UniProt:
A0A7D6BBS9
LinkDB
All DBs
Position
complement(285234..288194)
Genome browser
AA seq
986 aa
AA seq
DB search
MYQLKGISDAKWEIEKEAKAGMNVPVRVYGTKELVERMKRDRTFDQATNVACLPGIVGNS
FVMPDGHEGYGFPIGGVAAFNFENGVVSPGGVGYDINCLTGDSKILTNLGYFRTISGIAD
DFSQNSVSSGGLTAKMLNISLTKVMTLNITNKVIEEKEVFAFIKSNSKSKVLKIKTQNGF
ELKVTGNHKILTRTGMRKASELERGTEIAVYPFSGVRYNNPSNKVIVDEEGLRSLGLSEE
GIEVLKDRGLLPLREDNKALPIIAKILGYMLGDGYLNNDGVFRVYGKLGDMLELREDFLA
VGFKSFVKMRDRNYRIKTHYGEYRFRSKIAELGLHALSLSKLFIALGMPTGKKTVNDFGV
PRWVREAPKFIKRLFLAGFFGAEMSSPSTLSKTGFYSPIISQNKNERYVESCRKFFAQII
DMLGDFDIKATKISVRKEHINKFGDTYRIRLLLSADEENLLKLWGGIGFEYNNARKRLAN
IAMLYILEKKRLTKQRIEIAEKVKEYKKIGLTAREIKELLISNISNERFIERCLWDNVKS
KQRITLDFISFDEFVLKREKELDSYGALFDGIDEIDELDEAAEVYDLSLRDNHNFIANNI
IVSNCGVRLILTNLSEADVKPKLKELMDKLFRNVPSGVGSKGKIKLSISELDEAVKGGAK
WAIEKGYGWEEDVQRQEENGCVKGADPSKVSQKAKSRGAPQFGTLGAGNHFLEVQKVENV
MDEKTAKAFGLEQGKIVVMLHCGSRGFGHQVCDDYVRVMLNASKKYGIKLPDPELCCAPL
GSQEAGDYFGAMYSAVNYAFCNRQVMMHWIRQTFEDVFRKSADALGMKLVYDVCHNIAKV
EEHEFAGKMMKLCIHRKGATRAFPAGREEIPSIYRGVGQPVIIPGSMGTASYVLVGVEGG
KECFFSTCHGAGRMMSRHEAIRTYRGSDVKQKLESRGIQLRATGWDIISEEAPGAYKNID
EVVKGVELAGISRIVAKLIPLGVAKG
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtaccaactgaaaggaatttcagatgcaaaatgggagatagaaaaggaagccaaggct
ggtatgaacgtgcctgtgagagtgtacggaacaaaggagcttgttgaaaggatgaagagg
gacaggacttttgaccaagcaaccaatgtggcgtgccttcctggtatagtcggcaattcg
tttgtgatgcccgatggacatgaagggtacggttttccgataggaggtgtcgcagccttc
aatttcgaaaatggagtagtttcacccggaggtgtaggttacgatatcaactgcttaacc
ggagactcgaagatattgactaatctcggctattttagaactataagcgggatagcggat
gatttttcgcaaaactcagtcagttctggcggcctaactgcaaaaatgctcaatatttct
ttgactaaagttatgacgcttaatattaccaacaaagttattgaagaaaaggaagtattt
gcgtttataaaatctaactcaaaaagcaaagttttgaaaataaagacacagaatggattt
gagttgaaggtaaccggaaatcataaaatcttaactaggactggaatgcgcaaggcatcg
gagttagagagaggaactgaaatagcggtttatccgtttagcggtgtgcgttataacaac
ccatccaacaaagttattgtagatgaggaaggtttacgatcattaggtttatcagaagaa
gggatagaagtactaaaagacaggggcttgctgccccttagagaggacaataaggcttta
ccaattattgcgaaaatattggggtatatgctaggggatggctatctaaataatgatggc
gtattccgtgtttacggcaaactaggagacatgcttgagctcagagaggacttccttgcc
gtaggtttcaaatctttcgtgaaaatgagggataggaattacagaataaaaacgcattat
ggcgaatacagattcagaagtaagatcgcagagctgggtctacatgccctatccctctcc
aagctattcatcgcactcgggatgcctacaggtaagaaaacagtcaacgattttggagtc
ccgagatgggtgagagaagcacctaagttcataaaaaggctgttcttggcgggtttcttc
ggcgctgagatgtcaagtccctcaactcttagcaagacaggtttttattctccaataata
tcacagaacaaaaatgaaagatatgtagagagttgcagaaaattctttgcgcagattata
gatatgctgggtgattttgatatcaaagcaacaaagataagcgtgaggaaggagcacata
aataagtttggagatacctaccgaatcaggctgcttctatcagctgatgaggagaatcta
ctaaaactatggggcgggataggttttgaatacaacaatgctaggaagcggttggccaat
attgcaatgttgtatattctggaaaagaaaagattgacaaaacaaagaatcgagatagca
gagaaagttaaggaatataagaaaatagggctaacggcaagagagataaaggaacttcta
atatccaacataagcaatgaaagatttatcgagagatgcttatgggataacgtgaaatcc
aagcagagaataactctggatttcatatcttttgatgaatttgttttaaaaagagagaag
gagcttgattcttatggtgctctatttgatggaatagacgagattgacgagttagatgag
gctgcggaagtttatgacctcagtctcagagacaaccacaattttatagcaaacaacatc
atagtctcgaactgcggcgtcagactcatcctcacaaacctctcagaagctgatgtgaaa
ccaaagctgaaggagctgatggacaagcttttcaggaatgtcccttcaggagtgggcagc
aagggaaagataaagctgagcataagcgagcttgatgaagcagtgaaaggcggtgcaaaa
tgggctattgagaaaggttacggctgggaggaggatgtgcaaaggcaggaggagaacgga
tgcgtaaagggggcggacccatctaaagtcagccagaaggctaagagtaggggtgcgccg
cagttcggaactctaggcgcaggcaaccatttccttgaggtccagaaagtcgagaatgtc
atggatgaaaagactgcaaaagcattcggattggagcagggaaaaattgtggtgatgctg
cactgcggctcaaggggtttcgggcatcaggtttgcgatgattacgtaagggtgatgctc
aatgcgtcaaagaagtatggcataaaactgcctgaccctgagctgtgctgcgcgcctctc
ggtagccaggaagcaggtgattacttcggcgcgatgtattccgcagtcaactacgccttc
tgcaacaggcaggtgatgatgcactggataaggcagacctttgaggacgtgttcaggaag
agcgctgatgcgcttggaatgaagctcgtttatgacgtgtgccacaacatagcgaaggtt
gaggagcacgagttcgcggggaaaatgatgaagctgtgcatccacaggaagggcgcaacc
agagcctttcctgcaggaagggaggagatcccatccatttataggggagtggggcagcct
gtcataataccgggcagcatgggcaccgcctcctacgtgcttgttggtgtggagggggga
aaggagtgcttcttttcaacatgccacggcgcgggaaggatgatgagcaggcatgaggcg
ataaggacatataggggaagcgacgtgaagcagaagctggaaagcaggggcatccagctt
agggctacgggctgggatataatttccgaggaggctccgggcgcttacaagaatatagat
gaggttgttaagggagtcgagcttgcaggcatatcaaggatagttgccaagctgatccct
cttggcgttgcgaagggttag
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