Candidatus Fermentimicrarchaeum limneticum: Sv326_0624
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Entry
Sv326_0624 CDS
T06942
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
flt
Candidatus Fermentimicrarchaeum limneticum
Pathway
flt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sv326_0624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flt03019
]
Sv326_0624
03016 Transfer RNA biogenesis [BR:
flt03016
]
Sv326_0624
Enzymes [BR:
flt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sv326_0624
Messenger RNA biogenesis [BR:
flt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sv326_0624
Transfer RNA biogenesis [BR:
flt03016
]
Prokaryotic type
tRNA degradation factors
Sv326_0624
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
DUF6396
Motif
Other DBs
NCBI-ProteinID:
QLJ52799
UniProt:
A0A7D6BC41
LinkDB
All DBs
Position
complement(564566..566095)
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AA seq
509 aa
AA seq
DB search
MVDLRKVDLKVVARKVMEQYGFEAVFPANLMAEVGALEDQAQKAEPDVRDLRSLLWSSID
NSDSEDLDQIEYCKGVKSGEILVKVAIADVDMYVPEGSFADEHARRNTTSVYTGIETYPM
LPDRLSKGLSSLLPEQERLAVVVEFSVLPGGEVLPRGIYKALVRNKAKLIYEEVGAWLEG
SGPLPETVGSVLGLDAQLRLQDEASQRLEGYRVEQGALELETLEVRAILKQGKVSDLVVI
HENRAMQIIENFMVAANGVMSGFLEKARIPTIQRVVRIPKDWNGVVEVAKARGASLPAKP
DAKALSEFLASQKKADPELFPDLSLTIVKLLGSGEYVMYDSFQPRIGHFCLAVRDYTHGT
APNRRYVDVVIQRLLKAALERVPSPYGSKELSKIAAWCTEREGASKKVERFMEKAEAAFV
LSGKIGQSFNSIVTGVSDHGTYVRLIAPPAEGRVMRGVRGLRVGQKVVVKLINLNPNRGF
IDFEVAGWKGKRQKRSGGRGSRNWKHKRR
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggttgatttgcgcaaggttgacttgaaggtcgtcgcccgcaaggttatggagcagtac
ggattcgaggccgtgttccctgcgaatttgatggctgaggtgggcgccctggaggaccag
gcacagaaggctgagccggacgtcagggacttaagaagcttgctgtggtcttccatagat
aattcagattcagaagatttagaccagatagagtactgcaagggagtaaagagcggagaa
atcctcgtcaaagtggccattgcagatgtagacatgtatgtgccggagggctcattcgct
gatgaacacgcgcgcaggaacactacgtcagtttacaccgggatagaaacctatccaatg
cttccggacaggctctcaaagggcctttcctctcttcttccggaacaggaacgcctggct
gtggtggtggaattctcagtgctgccggggggagaggtgctgcccagaggaatttacaag
gcgcttgtgaggaacaaggccaaactgatatacgaagaggttggtgcatggctggagggc
agcggaccgctgcctgaaactgttggcagtgtactgggcctggatgcgcagctccggctt
caggatgaagcgtcccagcggcttgagggctacagggtcgagcagggggcgctggagctg
gagacgctggaagtgagggcgatactgaagcagggtaaggtgtcggacctagtggttatc
catgagaacagggcgatgcagatcatagaaaacttcatggtggcagccaacggagtcatg
tccggctttctggaaaaagccagaatcccgacaatccagagggtcgtccgcatcccaaaa
gactggaatggggttgtggaagtggccaaagctcgcggagcatcgctgccggctaagcct
gacgccaaggcactttcagaattcctcgcaagccagaagaaagccgacccggagctgttc
cctgacctttctttgacaatagtgaagcttctgggttcgggagaatatgtcatgtatgac
agtttccagccccgtatagggcatttctgcctggcagtgagagattacacccatgggact
gccccaaaccgccgctatgtggatgtggtaatacagagactgctgaaagcggcgctggaa
agggtgccatcgccctacggtagtaaggagctctcgaaaattgcagcctggtgcacggag
agggagggggcatcaaagaaagtggagaggttcatggagaaggctgaggcagcattcgtc
ctttccggaaagataggccagtcattcaacagcatagtcacaggagtctctgaccatggc
acatacgtgcggctcattgcaccgccggctgaaggacgcgtgatgcgcggggtgagaggc
ctccgggtgggccagaaggtggtggtgaagctcataaacctgaatccgaacagggggttt
atagacttcgaggtggctggatggaagggcaaacgccaaaagaggtctggggggaggggc
tcgcgcaactggaaacataagcgaaggtag
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