Candidatus Fermentimicrarchaeum limneticum: Sv326_0876
Help
Entry
Sv326_0876 CDS
T06942
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
flt
Candidatus Fermentimicrarchaeum limneticum
Brite
KEGG Orthology (KO) [BR:
flt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
flt03016
]
Sv326_0876
Enzymes [BR:
flt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Sv326_0876
Transfer RNA biogenesis [BR:
flt03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Sv326_0876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QLJ53051
UniProt:
A0A7D5XD43
LinkDB
All DBs
Position
complement(783888..784421)
Genome browser
AA seq
177 aa
AA seq
DB search
MRTFIAVEVDERLREKMAELQKQLSIDGVKLVEKENLHLTMHFLGEIDDTMKGKVTQAME
KVNCRKFEMSCNCAGAFPNRNYIRVIWVGVDAPELKSIHDQLGGELARLGFKKEDFSPHI
TLARVKFLKDKTKLIEFLETNAETELGDCTVDRILLKKSTLTPKGPVYENVYEKKLI
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactttcattgcagttgaagtggacgaacggctaagggagaagatggcagaactg
cagaagcagctctccattgacggagtgaagcttgttgagaaggagaacctgcatctaacc
atgcacttcctaggagagatagacgacaccatgaagggcaaggtaacccaggcaatggaa
aaggtgaactgcagaaagtttgagatgagctgcaactgtgccggggcattccccaacagg
aattacatacgagttatctgggtcggtgttgacgcacctgagctgaagagtatccacgac
caacttggaggggagcttgcaaggcttggtttcaagaaagaagatttctcgccccatata
acgctggcgagggtgaaattcctgaaagacaaaacaaagctgattgaattccttgagacg
aacgccgagactgaactcggagactgcacggttgacaggattcttctcaagaagagcacc
ctgactcccaaaggaccggtttatgagaatgtctatgagaagaagcttatctga
DBGET
integrated database retrieval system
