Candidatus Fermentimicrarchaeum limneticum: Sv326_0979
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Entry
Sv326_0979 CDS
T06942
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
flt
Candidatus Fermentimicrarchaeum limneticum
Pathway
flt03410
Base excision repair
flt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
flt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sv326_0979
03430 Mismatch repair
Sv326_0979
03440 Homologous recombination
Sv326_0979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
flt03400
]
Sv326_0979
DNA repair and recombination proteins [BR:
flt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Sv326_0979
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Sv326_0979
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sv326_0979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
QLJ53154
UniProt:
A0A7D5XIF7
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All DBs
Position
871658..872974
Genome browser
AA seq
438 aa
AA seq
DB search
MESAFIKRCNEVRGTIEGFGNPLIVNHYDADGLAAGSLVAKALRNRGINYSMLTLRKLEY
RSEMRDAGELIFVDFGGVEEALGDVLKGKKVVIIDHHQSSEGEILQANSQLFGFDGGSEI
SSSGTAYMVFRDAELVDLALVGAVGDMQFPLKSLNRKILREGIENGIVRCDIDLNIFGRM
SRPLVWFLSYCTEPFLPGLTGNDGNCYRFLSETGIDFRKDGKWRRYFELDMEERIQLISA
LVAYLHSKGAGEAAKELIGEVYILAKQPEGSELRDAKEYSTLLNACGRHNRPEIGIRVCL
GEEGAIEEARTLLNEHRKQLREGMFYAISNYEDFGKFYFLDGRGRIEDGVIGVVAGMLYG
GALPGDKPIVGIAFDEEGKIKISARATRKLVDGGLNLGEALSKACSSIGVGGGHNIAAGA
TIERDKLNEFLLNFGRAL
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgctttcattaaaagatgcaatgaggtcagaggaactatagaaggattcggg
aatcctcttattgtcaaccactacgatgcagacggactggcagccggatcgctcgttgca
aaggcgctcagaaatagaggaataaattacagcatgctgactctccgcaagcttgagtat
aggagtgagatgagggacgcaggggagctgatttttgttgattttggaggggtcgaagag
gcgcttggagatgtgctaaaagggaagaaggttgtgataatagaccaccatcagagtagt
gagggtgaaatcctccaggcaaactcccagcttttcggcttcgacggcgggagcgagata
agctcctctggaacggcctacatggtgttcagggatgccgaactcgtggacttggctctg
gttggcgcagtgggggacatgcagttccctctcaaaagccttaacagaaaaattctcagg
gaagggattgagaatgggattgtgagatgcgacattgatttgaacatctttgggaggatg
agcaggccgctggtgtggttcctttcctactgcacagagccgttcctcccggggcttacg
ggtaacgatgggaactgctacaggttcctcagcgagaccgggatagatttcaggaaggac
gggaaatggaggaggtatttcgagctggatatggaggagaggattcagctcatatccgcc
cttgttgcctacctccactcaaagggtgctggagaagctgcaaaggagctgattggagag
gtctatatacttgcgaagcagcccgaaggaagcgaattgagggatgcaaaggagtacagc
acgctcctcaacgcctgcgggaggcacaacagaccagagatagggattcgcgtatgtttg
ggcgaggaaggagcaattgaagaagccagaactcttctgaacgaacacaggaaacagctc
agggaaggaatgttctatgcgatttcaaactacgaggattttgggaagttctacttcctg
gatggaaggggcaggatagaggatggagtgataggggtggttgccggcatgctgtacgga
ggggcgctgcctggagacaagccgatagttgggattgcttttgatgaggaaggaaagata
aaaatttcagcaagggccaccaggaagcttgttgacggtggtttgaatttgggcgaggct
ctcagcaaggcctgcagtagtataggggttggtggggggcacaacatagctgcgggagcg
actatagagagggacaagctcaacgaattcctgctgaacttcgggagagcgctgtga
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