Candidatus Fluviicola riflensis: CHH17_00335
Help
Entry
CHH17_00335 CDS
T05019
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH17_00335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flu03019
]
CHH17_00335
Enzymes [BR:
flu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHH17_00335
Messenger RNA biogenesis [BR:
flu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHH17_00335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASS47230
LinkDB
All DBs
Position
complement(68616..69737)
Genome browser
AA seq
373 aa
AA seq
DB search
MLFKDLNLSQSLLDALEAVGYTTPTPIQEQSIPHILAGRDIFGCAQTGTGKTASFALPLL
QLLEPTEVKGKRNVKALILAPTRELAIQIGESFRDYGKNSKLRSAVIFGGVSQHKQVNQL
SAGIDILIATPGRLLDLMQQGFITLQHITHFVLDEADRMLDMGFIHDIKKVLAKLPKNKQ
TIFFSATVSPEIKQLAGTLLFDPANVQVDPISSTAELVTQTLYYVEKEEKRSMLKRVIEK
ENIEHALVFTRTKHGADRVAKELNKFGIRSEAIHGNKSQNARERALKGFKNREIRILVAT
DIASRGIDVDQLSHVINFELPEVAETYVHRIGRTGRAGSTGKAISFCSSDEKQYLKGITK
LINQAIPEGTVSL
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgttatttaaagatttaaatttgagtcaatccttattggatgcgctcgaagccgtgggt
tacaccacaccaacccctatccaggaacaatctattccacacattttagcaggacgcgac
attttcggatgtgcacaaacaggaaccggtaaaacggcttcatttgccttgccacttctt
caattattagaaccgacagaagtaaaaggaaaacgcaacgtaaaagccctgattttggca
cctacacgtgagttagccattcaaattggtgaaagtttccgtgattacggtaaaaactcc
aaattgcgttcggccgttattttcggtggtgtttcgcagcacaaacaagtcaatcaatta
agcgcgggaattgatatcctgatcgctacacctggccgtttgctcgatttaatgcaacaa
ggtttcattaccttgcagcacatcacgcattttgtgttggacgaagccgaccgcatgctc
gacatgggtttcatccacgatatcaagaaagtgttggccaaattgccgaaaaacaaacaa
acgattttcttctctgcaaccgtttctccggaaatcaagcaattggcgggaaccttgttg
tttgatccggcaaatgtacaggtcgatccgatttcttctactgccgaattggttacacaa
acgttgtactacgtagaaaaagaagaaaaacgttcgatgctgaaacgtgtgatcgaaaaa
gaaaacatcgaacacgcattggtatttacccgcaccaagcatggtgctgaccgcgttgct
aaagaattgaacaaattcggaattcgttcggaagccattcacggaaacaaatcgcagaat
gcgcgcgagcgtgcgttgaaaggattcaaaaaccgcgaaatcagaattctcgttgcaacc
gatatcgcttcacgcggaattgatgtagatcaactgagtcacgtgatcaatttcgaattg
ccagaagtggctgaaacttatgtacaccgtattggccgtacaggccgcgcaggttctacc
ggtaaagcgatctcgttttgttcttctgacgaaaaacaatatttgaaaggaattacgaaa
ctcatcaatcaggcgattccggaaggaaccgttagtttgtaa
DBGET
integrated database retrieval system
