Candidatus Fluviicola riflensis: CHH17_02705
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Entry
CHH17_02705 CDS
T05019
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
flu
Candidatus Fluviicola riflensis
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flu03032
]
CHH17_02705 (topA)
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_02705 (topA)
Enzymes [BR:
flu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CHH17_02705 (topA)
DNA replication proteins [BR:
flu03032
]
Prokaryotic type
DNA Topoisomerases
CHH17_02705 (topA)
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CHH17_02705 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SPAR
FGase
Motif
Other DBs
NCBI-ProteinID:
ASS47673
LinkDB
All DBs
Position
634268..636634
Genome browser
AA seq
788 aa
AA seq
DB search
MSKNLVIVESPAKAKTIEGYLGKDFIVKSSFGHVRDLASKGLAIDIENNFLPDYEVSSDK
KAIVAELKKLTKEAEVVWLATDEDREGEAISWHLYETLGLSKKETRRITFNEITKTAILK
AIEKPREINKPLVDAQQARRVLDRLVGFELSPVLWKKVRPSLSAGRVQSVAVRLIVEREK
EIMNFLSESYFRVAGSFLKGKESIKAEVSKHFGSDTEVEGFLTECGNTTFSVLDVQTKPA
KKTPAAPFTTSTLQQEASLKLGYSVSRTMQVAQRLYEAGRITYMRTDSVNLSETAMLGAE
TEIKSAYGNQYSNPTKYATKSANAQEAHEAIRPTDFGLHSLTGGDSDEVRLYDLIWKRAI
ASQMSHAQLERTTISIGNEKLPEIFAAKGEVIKFDGFLKVYLETSLEDDEDGELSGLLPA
VTVGEKLDVQFIRATQRFSRAPSRYVEAALVKKLEELGIGRPSTYAPTISTIQKRGYVEK
KEREGEERAYLVLDLKGTEIVRETKTEITGRDKNKLFPTDIGMVVTDFLKEHFEHIMDYH
FTAEVEGQFDEIAHGKIEWTDMIRKFYNPFHESVEDTLEHSERATGERILGVHPVSNKKV
LARIGRFGPMIQVGDEKEDGEKPQFASLHASQSIHTITLEDALELFKLPRVLGELEGETV
KVNVGRFGPYIQLGKLFVSLKKEDDPMQIQLDRALELIVEKREVEANRLIKDFPENKEVQ
LLNGRYGAYLKIGKDNFKLPKGTEAASLTLEQCLAIAADPANAPKKKPGARKAPAKKPAA
KKPATKKK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaacttagtaatagtggagtcacctgcgaaagcaaagactatcgaaggatac
ctcggaaaagatttcattgtgaagtcgagttttggccacgtaagggatctggcatcaaaa
ggccttgcgattgatatagaaaacaattttctgccagattacgaagttagttccgataag
aaagcgattgtcgcagaattgaaaaaattgaccaaagaggcagaagttgtatggctcgca
acggatgaggaccgcgagggagaggctatttcctggcacttatatgaaacgcttggtctg
tccaaaaaggaaaccagacgaatcactttcaatgaaattaccaaaaccgcgattttaaaa
gcaattgaaaaaccgcgcgaaatcaataaaccattggtagatgcccaacaagcccgtcgt
gtattagaccgtttggtaggttttgaattgtcgcctgtgttgtggaaaaaagtacgtccg
agcttgtcggctggtcgtgtacaatcggtagctgtgcgcctgattgtagaacgtgaaaag
gaaatcatgaacttcttgtcggaaagttatttccgcgttgcaggttctttcctcaaagga
aaagagagcatcaaggcagaggtgagcaagcatttcggaagcgataccgaagtagaagga
ttcctaaccgaatgtggaaatacaacattttccgtgctggatgtgcaaaccaaaccggct
aagaaaacaccggccgctccgtttacaacttcaaccctgcagcaggaagccagtttgaaa
ctcggttactccgtttcacggacgatgcaggtggcgcagcgcttatacgaagcaggacgc
atcacttacatgcgtaccgatagtgtgaatttatcggaaaccgcgatgttgggtgccgaa
actgaaatcaaatcagcttacggaaatcaatatagcaatcctacaaaatacgcaacaaaa
agtgccaacgcacaggaagctcacgaggccattcgtccgacagatttcgggttgcatagc
ctcaccggtggcgattcggatgaagtgcgtttgtatgatttgatttggaaacgcgccatt
gcttctcagatgagccacgcacaactagagcgcactactatttccatcgggaatgaaaaa
ttaccggaaatttttgcagccaaaggtgaagtcatcaaatttgatggattcctgaaagta
tatcttgaaacctcgcttgaggatgatgaagacggtgaattatccggattattgccggct
gttaccgttggtgaaaaactggatgtacagtttattcgggctacacagcgtttttccagg
gctccttcgcgttatgtggaggcagcattggtgaaaaaactcgaagaattgggaatcggc
cgtccttcaacatacgcgccaacgatctcaaccattcagaagcgtggttacgtagagaaa
aaagaacgcgaaggtgaagaacgcgcttacctcgtgcttgatttgaaaggaactgaaatt
gttcgtgaaaccaaaacggagatcacaggtcgcgataaaaacaaactcttcccaaccgat
atcggtatggtagtgaccgatttcctcaaagagcattttgaacatatcatggattaccat
ttcacagcagaagtggaaggccagtttgatgaaatcgcacacggcaagatagaatggacc
gatatgatccgcaaattctacaacccgttccacgaaagtgtagaagataccttggagcat
tcggaacgcgctacaggagaacgaattctgggtgtgcatcctgtttccaataaaaaggta
ctggcacgcatcgggcgttttggtccaatgatccaggtcggtgatgaaaaggaagacggt
gaaaagcctcagtttgcatccttacatgcttcccagtccattcataccattacgttggaa
gatgcgcttgagctattcaaattgcctcgcgtactgggcgaattggaaggtgaaaccgtg
aaagtgaatgttgggcgtttcggtccttatatccaattggggaaattgtttgtttccctg
aaaaaggaagatgatccgatgcagattcaattggaccgtgctttggaacttattgttgaa
aaacgcgaggtagaagccaatcgtttgatcaaggatttccctgaaaacaaggaagtgcaa
ttgctcaacggccgttacggagcttaccttaaaattggaaaagacaactttaaattacca
aagggtaccgaagctgcttcgttaacattggaacaatgtcttgctattgcagcagatccg
gccaatgccccgaaaaagaaacccggagcgcgtaaagcacctgctaaaaaacctgctgcc
aaaaagcctgctacgaagaagaaataa
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