Candidatus Fluviicola riflensis: CHH17_02875
Help
Entry
CHH17_02875 CDS
T05019
Name
(GenBank) tRNA pseudouridine(38-40) synthase TruA
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
flu
Candidatus Fluviicola riflensis
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
flu03016
]
CHH17_02875
Enzymes [BR:
flu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
CHH17_02875
Transfer RNA biogenesis [BR:
flu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CHH17_02875
Prokaryotic type
CHH17_02875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-ProteinID:
ASS47707
LinkDB
All DBs
Position
675584..676318
Genome browser
AA seq
244 aa
AA seq
DB search
MSEHRFFVELAYDGTAYAGWQRQPNARSVQETLEQQLSKLYSGTEVPVTGCGRTDAGVHA
HFFVAHVHLPEGIDLTELKHKLNKMLPNDIAVFRIYPVSMDMHARFQASSRTYRYYLHQE
KNVFLKNSLFFPRALNFDRMNEAAKYFLGKQDFTSLSKLHTDVKTNICTVSEAVWKQEGS
QWYFEITADRFLRNMVRATVGTLLDVGIGKLEPETILTILEAKDRREARHSVDAHGLFLW
RVTY
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacatcgattttttgtggagctggcttatgacggaacggcttatgcaggttgg
caacgtcagcccaacgcccgatccgtgcaggaaacgttggaacagcaattatcgaaattg
tatagcggaacggaagttccggtaacaggttgcggcaggacggatgcgggagttcacgca
cattttttcgtagcacacgttcatttaccggaaggaattgatctgactgaattgaagcac
aaactcaataagatgttgccgaacgacattgccgtttttcggatctatccggtttcgatg
gacatgcatgcacgttttcaggcaagctcgcgcacataccgttattatttgcaccaggaa
aaaaatgtattcctgaaaaacagtttgtttttcccgagagcgctcaactttgaccggatg
aatgaggcggcgaagtattttctgggtaaacaggattttacatcgttatcaaaattgcat
accgatgtaaaaacgaatatctgcaccgtttccgaagccgtttggaaacaggagggaagc
cagtggtattttgaaattactgccgaccggtttttgcgcaatatggtacgggcaaccgtt
ggaacgttactggatgtaggaatcgggaaactggaaccggaaacgattctgacgattctg
gaggcaaaggatcgccgcgaagcccggcattctgttgatgcacatgggttgtttttgtgg
cgcgttacctattaa
DBGET
integrated database retrieval system
