Candidatus Fluviicola riflensis: CHH17_03925
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Entry
CHH17_03925 CDS
T05019
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH17_03925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flu03019
]
CHH17_03925
Enzymes [BR:
flu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHH17_03925
Messenger RNA biogenesis [BR:
flu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHH17_03925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
ERCC3_RAD25_C
Helicase_C_2
PhoH
SNF2-rel_dom
Flavi_DEAD
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASS47900
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All DBs
Position
924823..926046
Genome browser
AA seq
407 aa
AA seq
DB search
MRFEEYPIHDLIKQQLAYLGFKRPTDIQFKAIQPIMKGEDVFAIAQTGTGKTAAFVIPIL
NDLMKHKAHSKAPRCLVLAPTRELAHQITEVFKEIGKKTDVRIASVMGGVEQENQIQQLR
KGVDVIVATPGRVFDLRSQGFLVLDELRYLVLDEADRMLDLGFDEDIKAIHKLSPKKNRQ
TLFFSATITKKIKSLAYDVVREAIRIQISPKDLITKNVDHAFITVEMDDKRFFLENMIQE
YPDYKFVVFVRTKVRCERVVAAMERVGIKSEALHGGKEQQDRFDILNRFRNGENKVLITT
DVAARGIDIPGVDYVINYDLPDMEEQYVHRVGRTGRGTNKGQALSFCSPEERPLLDAIQT
YIETEIDELEINKHDYKAILEDSEDVTYNWQKLLDQANEEDGTSEKW
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgcgttttgaagaatacccgatacatgatttgatcaagcagcaactcgcttatttgggt
ttcaaacgccccaccgacattcaattcaaagccatccagccgatcatgaaaggcgaagat
gtgtttgctattgcgcaaacgggaacaggaaaaacggccgcttttgtgattccgatcctc
aatgatctgatgaaacataaagcacattcaaaagctccacgatgtttggtacttgcacca
acacgtgaattggctcatcagatcacagaggtttttaaggaaatcggaaaaaaaaccgat
gttagaattgcctcggtaatgggaggagtggagcaggaaaatcagatccagcaactgcgt
aaaggcgttgatgtgattgtggctacacccggacgggtttttgatcttcgttcacaaggt
tttttggtgttggatgaattgcgttacctcgttttggacgaggctgatcgcatgcttgac
ctggggtttgacgaagatatcaaagccattcacaagctttcacccaagaaaaaccggcag
acattgtttttttcggcaactattaccaagaaaattaaatcgcttgcttatgatgttgtg
cgcgaagctatccggatccagatttcgccaaaagacctgattacaaaaaatgttgaccat
gcttttatcacggttgaaatggatgataaacgttttttcctggagaacatgatccaggaa
tatcctgattataagtttgtggtgtttgtgcggacgaaagtgcgttgtgaacgtgtagtc
gcggcaatggaacgggttggtattaaaagcgaggctttacatggcggaaaagaacaacag
gatcgttttgatattctgaaccggttccgaaatggagaaaataaggtgctgattaccaca
gatgttgccgcccgtggaattgatatcccgggagttgattatgtgatcaattacgatttg
ccggatatggaagaacaatacgttcaccgtgtcggaagaacaggccggggaacaaataaa
ggccaggcactttctttctgtagtccggaagagcgtccgctgctggatgctattcaaacc
tacatcgaaacagagattgacgaactggaaatcaacaagcatgattacaaagccatcctg
gaagatagcgaagatgttacttataattggcaaaaactgctcgaccaggcaaatgaggaa
gatggtacttccgagaaatggtaa
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