Candidatus Fluviicola riflensis: CHH17_04285
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Entry
CHH17_04285 CDS
T05019
Name
(GenBank) hypothetical protein
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
flu
Candidatus Fluviicola riflensis
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
flu03009
]
CHH17_04285
03012 Translation factors [BR:
flu03012
]
CHH17_04285
Enzymes [BR:
flu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CHH17_04285
5.6.2.5 RNA 5'-3' helicase
CHH17_04285
Ribosome biogenesis [BR:
flu03009
]
Eukaryotic type
Other ribosome biogenesis factors
CHH17_04285
Translation factors [BR:
flu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CHH17_04285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_30
AAA_19
Viral_helicase1
Helicase_RecD
DEAD
PhoH
PIF1
ResIII
NPHP3_N
UvrD-helicase
DUF5481
AAA
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ASS47966
LinkDB
All DBs
Position
1004515..1006293
Genome browser
AA seq
592 aa
AA seq
DB search
MDFIEQLYQAVIAEKKELNDTYEKQQNLSEPEQRKLGILLFPITILSQETVGSLMIIGFQ
TSYPINETYFRKGCSIRCLQGGWSAEGRLQELSYNTGVFSILDDDIPNLRDEPVRIYFVP
DDKTMRCMELGCKLMNEHPQVEPFLAFLEQKNPSIVDKIDHPKLNDQQRSAVGKIVGPDP
VVPIQGPPGTGKTLTLSIGIKQLIAQGKKIIISAPSNTAVDNLCHLLLDCSIPILRLGNE
EKMSDRVTPYTLDGYLENGSDKKLLDHLKSSLRKAENTANKHIRNYTKEAGDEKRNARKE
CSTLRKEIRKVGQDAKNQLLESIPVIAGTPVGLFNELPKTFLTDVVIIDEAGQCLEPLAW
LTASFGKRLVLCGDPQQLPPTVFSQKAKQLGLEKSLLERVMQFFPSTLLDVQYRMAPEIV
NCINPFFYENQLQTFHTERKGEVRFIDMAGFGEGEQQDESSGSIYNSDEITTVKRITEVL
SINPSNTIILSPYNAQLGLLKIALPKFKISTIDSVQGQEEDTIIISLTRSNSDQNIGFLK
DYRRTNVAISRARFQCVIVGDSSTLGNDAFYIELLDFIEENGIYQSAWEYVE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtggatttcattgaacaactatatcaggctgtaattgctgagaaaaaagagctgaatgac
acttacgagaagcagcaaaatctttctgaaccggaacagcgaaaattgggaattctcttg
tttcccattaccattctttcacaggaaacggtaggaagccttatgattatcggatttcag
acctcctatccgatcaatgaaacgtatttcagaaaaggatgttccattcgttgtttacaa
ggaggctggtccgctgaaggccggttgcaggaactgagctataacacaggtgttttttca
attctggatgatgatattcccaacttacgtgacgaaccggtaaggatttatttcgtgccg
gatgacaaaacaatgcgctgcatggaactgggatgtaagctaatgaatgagcatccgcag
gttgaaccgtttttagcattcctggaacaaaaaaatccttcaatagttgataaaattgat
catccgaaactcaacgatcaacaacgatcagcagttgggaaaatagtaggtcccgatcct
gtggtaccaattcaaggtccgccgggaacaggaaaaacactcacactttctatcggaatc
aagcaattgatcgcacagggaaaaaagatcattatcagtgcaccaagcaatacggccgtt
gacaatctttgtcatttgttattggattgttccatcccgattctgcgtttgggaaatgag
gaaaaaatgagtgatcgcgttacgccctatactttggacggatatttggaaaacggctct
gacaaaaagctcctcgatcatttaaaatcatctcttagaaaagccgaaaatacggccaat
aagcacattcgaaactacacaaaagaggcgggtgatgaaaagcggaacgcacgaaaagag
tgtagtacgcttcggaaagaaatcaggaaagttggccaggatgccaaaaatcaattattg
gaaagtattcctgtcatcgccggaacgccggtcgggttattcaatgaacttcccaaaaca
tttctaacggatgtcgttattattgatgaagcaggtcaatgtttggaaccgctggcttgg
ttgactgccagtttcggaaaacgactggttctatgtggagatcctcagcaacttccgcca
actgtattttcgcaaaaagccaaacaactcggattggaaaaatcattgcttgaacgcgta
atgcaattcttcccatccacgctacttgatgttcagtatcgaatggctcctgaaattgtc
aactgtatcaatcctttcttctacgaaaatcagcttcaaacatttcatacagaacgaaaa
ggtgaagtccgtttcatcgatatggccggattcggtgagggagaacagcaggatgaatcg
tcaggaagcatttacaattcagatgaaatcactaccgttaaacggatcacggaggtactt
tcgatcaacccttcaaatacaattatactttcaccctacaatgcacaattgggattattg
aaaattgcgttgccgaagttcaaaatttcaaccatcgattctgtccagggacaagaggaa
gataccattatcattagtttaacccgaagtaacagcgatcagaacataggctttttgaaa
gattatcgaagaacaaatgttgccatctcacgggctcgttttcaatgcgtcatcgtaggt
gacagttcaacattaggtaacgatgcgttttacatagaattgctcgatttcattgaagaa
aacggcatctatcaaagtgcctgggagtatgttgaatga
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