Candidatus Fluviicola riflensis: CHH17_07985
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Entry
CHH17_07985 CDS
T05019
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH17_07985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flu03019
]
CHH17_07985
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_07985
Enzymes [BR:
flu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHH17_07985
Messenger RNA biogenesis [BR:
flu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHH17_07985
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CHH17_07985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Glu_cys_ligase
DUF5817
ArsR
Motif
Other DBs
NCBI-ProteinID:
ASS48674
LinkDB
All DBs
Position
complement(1911688..1913574)
Genome browser
AA seq
628 aa
AA seq
DB search
MDKSRELLKRIWGYDNFRPLQEDIADAAIYGKDVLALLPTGGGKSICFQVPGLAREGICI
VISPLIALMEDQVRQLVSRGVRAKALTSGMSYRDMDITLDNARFGGLDFLYVSPERIQTR
LFQERLKLMEVGLLVVDEAHCIAEWGHDFRPSYLGISTIREIHPQVPIMAVTATATEQVK
QEITERLQLHHPQVFEASFERSNLTYEVYRVTNKPDALLKLCERMTGYVGIVYCQTRRSV
KDVMNLLLSQKIKANMYHGGMDAKQRSLALTDWLSEETPVMVATNAFGMGIDKPNVRFVA
HYELPNNPEAYFQEAGRAGRDGYPARTFAFIAPNDLEEIEQRIAAQFPPIDQIKLAYRAL
CNFFKIAIGSGDHETYPLDFALFTKRFKLDPKVVYPAFKILEMNGNIVFSEHAFHGSRVK
ITINNAHLYSFQLSNPTVDPLITLICRTHSNVFDEFCEIDEWQFCKQLKLSQETLTKQLE
YLETHGIIDITWRTSHPLVTFLHERKPDDYLEINPEHYLHRKERAFVRLNAMKELVEREE
CRQVQLIRYFGQDTAPCGKCDVCKRLNALESPTDLSEQILELFTKPLAQREVLMQFHESL
HEAVKNALKQLLIEEKIVFNSGRYSIRR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggataaaagtcgcgaactgctgaaacggatttggggttatgacaatttccgcccgctg
caggaggatattgctgacgctgctatttacggcaaagatgtactggctttattgccaacc
ggcggcggtaaatcgatttgttttcaggttcccggtctggcgcgcgaaggtatttgcatt
gtcatttctccactcattgcgttaatggaagaccaggttcggcaattggtcagtcgcgga
gttcgggcaaaagctctcacaagtggcatgtcttaccgcgatatggatatcacactcgac
aacgctcgtttcggtggtttggactttctatatgtttctccggaacgaattcaaacccgc
ttgttccaggaacgcctcaaactcatggaagtcggattgctggtggtagatgaagcacat
tgcattgctgaatggggacacgatttccggccttcttatttgggaatcagcactatccgg
gaaattcacccgcaagtaccaattatggcggtgaccgcaactgcaactgaacaggtgaaa
caggaaatcaccgagcgcttgcaactgcatcatccacaggtatttgaagcttcttttgaa
cgttcaaatctcacgtatgaagtctaccgggttaccaataaaccggacgcattgctgaaa
ttatgcgaacgaatgaccggttacgtgggaatcgtttattgtcaaacacgccgcagcgta
aaggatgttatgaacctacttctttcccaaaagataaaagccaatatgtaccacggcgga
atggatgccaagcagcgttcattagccttaacagattggctttcggaagaaacgcctgtt
atggtggctaccaatgctttcggaatgggaatagacaaaccgaatgtccgttttgtggcg
cattatgaacttcccaataacccggaagcttacttccaggaagcaggacgtgcgggaaga
gacgggtatccggccagaacgtttgcatttattgctccaaatgacctcgaagaaatagaa
caacggatcgcagcacaatttcctcctatcgatcagattaagcttgcgtaccgtgctttg
tgtaattttttcaaaattgccatcggctctggtgatcacgaaacatatccgctggatttc
gcattgtttaccaaacgcttcaagctcgatccgaaagtcgtctatccggcatttaagatt
ttggaaatgaacgggaatattgttttcagcgagcatgcttttcacggttcacgtgtcaaa
atcacaatcaacaatgcgcatttgtatagttttcagctttcaaatccaactgtcgatccg
ttgattacattgatctgccgtactcatagcaatgtgttcgatgaattttgcgagattgac
gaatggcagttttgtaagcagttaaaactttcgcaggaaacattgaccaaacaacttgaa
taccttgaaacgcatggaatcattgatattacatggcgaacttcccatcctttggtaact
ttcctgcacgagcgcaaacccgacgattatttggaaattaatccggagcattatttgcac
cgaaaagagcgtgcttttgtccggctcaatgccatgaaggagcttgtggaacgggaagaa
tgcagacaggtacaattgatccgatattttggacaggatacggctccctgcggaaaatgt
gatgtctgtaagcgactaaatgctttggaatctcccaccgatttatctgaacaaatcctg
gagttgtttaccaaaccactggctcagcgcgaagtattgatgcaattccacgaaagtctg
cacgaagccgtgaaaaacgctttgaaacagcttctgattgaagaaaaaatcgtttttaat
tccgggaggtattcgattcgccggtaa
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