Candidatus Fluviicola riflensis: CHH17_11880
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Entry
CHH17_11880 CDS
T05019
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03030
DNA replication
flu03430
Mismatch repair
flu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHH17_11880 (holA)
03430 Mismatch repair
CHH17_11880 (holA)
03440 Homologous recombination
CHH17_11880 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flu03032
]
CHH17_11880 (holA)
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_11880 (holA)
Enzymes [BR:
flu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHH17_11880 (holA)
DNA replication proteins [BR:
flu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CHH17_11880 (holA)
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CHH17_11880 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
ASS49416
LinkDB
All DBs
Position
2779492..2780490
Genome browser
AA seq
332 aa
AA seq
DB search
MDYKSIIKDIKNKQFKPIYALHGEEPYFIDAICDAIIENALEEHERDFNQTVFYGRDADP
LAVTSEAKGFPMMSERRLVVLREAQDMKDIYALESYCAQPNPSTVFVICHKYKALDGKRK
MVKELASTGLVFKSEKVKEYQLNDWISNYVKGIGFDITSKAAALLGEFLGNDLGRIVNEL
EKLSIVLEKGTRISDIHIEENIGISKDYNNFELTNAIAKRDSLKVFQIAHYFERNPKDHS
IIAIISNLFGFYTNLMRIHFLPNKNPDAVATSLRVHPFVAKELMLAANQYPPKILASNVA
ILHEYDLKAKGVGNSTFSEGELMREMLYKLMN
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggattacaagtcaatcatcaaggacataaagaataagcagtttaagccgatttatgcg
ttgcacggcgaagaaccttatttcattgatgctatttgtgatgccattatagaaaacgcg
ctggaagaacacgaacgcgattttaatcaaacggtgttttatggccgcgatgccgatccg
ctggcagtaacaagcgaagccaaaggtttcccgatgatgtcggaaagacggttggtcgtc
cttcgcgaagcacaggatatgaaagatatctacgcgctggaaagctattgcgcgcagcca
aatccatcgaccgtttttgtgatttgccataaatacaaagccctcgacgggaaacgtaag
atggtcaaggaactcgcttcgaccggactcgtgtttaaatcagaaaaagtaaaagaatac
caactcaacgattggatttccaattacgtaaaaggaatcggttttgatattacgtccaaa
gctgcagcattattgggtgaatttctcggaaatgatttaggcagaattgtcaacgaactg
gaaaaattgagcatcgttctcgaaaaaggaacgcgcatcagtgatattcacatcgaagaa
aacatcggaattagtaaggattacaacaattttgagctcacaaacgctattgccaagcgc
gattcgctgaaagtattccagattgcccattatttcgaacgcaacccaaaagatcattct
attattgcgatcatttccaacttattcggattttataccaacctcatgcggattcacttt
ttaccgaataaaaatccggatgcggtagccacaagtttgcgtgttcatccgtttgtcgcc
aaagaattgatgctggcagccaatcagtatccgcccaagattttagcgtcgaatgtggcg
attctccacgaatacgacctgaaagcaaaaggtgtgggaaattcaaccttcagtgaaggc
gaactgatgcgcgaaatgctttataaactcatgaattga
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