Candidatus Fluviicola riflensis: CHH17_14095
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Entry
CHH17_14095 CDS
T05019
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHH17_14095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flu03021
]
CHH17_14095
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_14095
Enzymes [BR:
flu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHH17_14095
Transcription machinery [BR:
flu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHH17_14095
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHH17_14095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ASS49839
LinkDB
All DBs
Position
complement(3277883..3278875)
Genome browser
AA seq
330 aa
AA seq
DB search
MAILDFQKPDKVIMIQSDERKGQFEFRPLEPGYGITVGNALRRILLSSLEGYAISSVRIE
GVDHEFATLKGVVEDVTEIVLNLKQVRFKQQIEGTDNESVVISISGQDKLTAGDLGKFTS
AFQVLNPDLVICNMESSVKLEIELSIVKGRGYLPAEENKSGNAPFGTIFIDSIFTPIVNV
KYTIENYRVEQKTDYEKLVLEVTTDGSIHPKDALKEAAKILIHHFMLFSDERITLDSEVK
SETEEFDETSLHMRQLLKTKLVDMDLSVRALNCLKAADVETLGDLVSYNKNDLLKFRNFG
KKSLTELEDLVDAKGLNFGMNVAKYKLDKD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttagattttcaaaagcctgacaaggtaattatgatccagtctgacgagcgt
aaaggacaatttgagttccgtccgcttgaaccaggatatggaatcactgtaggaaacgca
ttacgtcgtatcttgctttcttcattggaaggttacgccatttcttcagtgcgcattgaa
ggtgtagaccatgagttcgcaacgttgaaaggtgtcgttgaagacgttaccgaaatcgtt
ttgaacttaaaacaagttcgcttcaagcaacaaatcgaaggaacagataacgaatcagtt
gtgatttcaatttccggtcaggataaattgactgccggggatcttggtaaattcacatct
gcattccaggtattgaacccggatttggtgatctgtaatatggagtcttcagtgaaactg
gagatagaattatcaattgtcaaaggaagaggctacttgcctgctgaggaaaacaaatca
ggaaacgcaccattcggaacaatctttattgactccatttttacgcctatcgttaatgtg
aaatacacgatcgaaaactatcgtgttgagcaaaaaacggattacgagaaattggttctt
gaagtaacaaccgatggttcaattcacccgaaagatgcattgaaagaagccgctaaaatt
ctgattcatcactttatgttgttctccgatgaacgtatcacgttggatagcgaagtgaaa
tctgaaacagaagagtttgacgaaacttcattgcacatgcgtcaattgcttaaaacaaaa
ctggtggatatggatctttctgtacgcgccctgaactgtttgaaagctgcagacgtagaa
acacttggagacttggtttcatacaacaaaaatgacttgttgaagttccgtaacttcggt
aagaaatcattgacggagttagaagatcttgttgatgccaaaggattaaacttcggtatg
aacgtagcgaagtacaaattagataaagactag
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