Candidatus Fluviicola riflensis: CHH17_16565
Help
Entry
CHH17_16565 CDS
T05019
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03030
DNA replication
flu03410
Base excision repair
flu03420
Nucleotide excision repair
flu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHH17_16565
03410 Base excision repair
CHH17_16565
03420 Nucleotide excision repair
CHH17_16565
03440 Homologous recombination
CHH17_16565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flu03032
]
CHH17_16565
03400 DNA repair and recombination proteins [BR:
flu03400
]
CHH17_16565
Enzymes [BR:
flu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHH17_16565
DNA replication proteins [BR:
flu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHH17_16565
DNA repair and recombination proteins [BR:
flu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CHH17_16565
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHH17_16565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_2
HHH_5
Ubie_methyltran
DNA_pol_lambd_f
DUF3913
Motif
Other DBs
NCBI-ProteinID:
ASS50308
LinkDB
All DBs
Position
complement(3852536..3855340)
Genome browser
AA seq
934 aa
AA seq
DB search
MLTPVAEKKLFLLDAFALIYRAYFAFAKNPRVNSKGQNTSAAFGFTNALIDVIQKEQPTH
LAVVFDAPGGATNRTADYEHYKANRDEMPEDIRSMIEPIKRILEAFHIPVLLLEGFEADD
IIGTLAKRAEEEGFITYMMTPDKDFGQLVSENIFIYKPGRGGDPASVMGVKEVCEKFEVS
NPMQVIDILGLWGDAVDNIPGIPGVGEKTAKKLIQDYGSMEELFKNTDDLKGKMKENVIA
FEEQGRLSKMLATIIVDVPVPFDPLDLRLDKPDTEKVKEIFTELEFRNLAKRVIGEEIVV
TSSANGENGQLDLFGTQSLVEVQQASPTAGYKTIATEKPSYHHVSLPEERAELLAKLMKQ
TSVCFDTETTDIEAMHADLVGASFCFKEREAYYVSFPKEFDAAKKIIHEFAPFFQSKTIE
KIAHNLKYDMKVLMRYDLQLDGPLFDTMVAHYLIQPEAKQGMDFLAQYYLQYQPVSIETL
IGKKGKNQGNMGDLPQEQIVDYACEDADITFQLKQLFAPQIEKDHLRHLFHTIEMPLVTV
LAKMENEGVAIDVDHLKNYSKQLEMETGELETSIKAEAGMDFNLDSPKQLGEVLFDHMKI
SSKAKKTKTGQYATSEDILQQHKSDHPIIGMILDYRQMRKLKSTYVDPLPTMLDRVDGRV
HTSFMQTVTATGRLSSNNPNLQNIPIRTDRGKEIRRAFIARDTNHQLMSADYSQIELRVI
AALSNDTSMIQAFKDGVDIHKATASKVFHTPLEEVTKEQRSAAKAVNFGIIYGQSAFGLS
QNLGISRTEAKQIIDSYFAQYSTIKGYMDNAVKNARENGYVETIMQRRRYLPDINSANAV
VRGFAERNAINAPIQGSAADIVKLAMVAVDKAMTEANVQSKMILQVHDELVFDILKGEEE
VMKKLVKTAMEGAIQLAVPMEVEMELADNWLDAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgcttactccggttgcagaaaaaaaactctttttattagacgccttcgccttgatttac
cgcgcttattttgcatttgccaaaaatccacgggtcaactcaaaaggccagaacacttct
gcggcattcggttttaccaatgcattgatcgatgtaattcaaaaagaacaacctacgcat
ttggctgtggtattcgacgcaccgggcggagcaaccaacagaacggcagattacgagcat
tacaaagccaatcgcgacgaaatgcccgaagatatccgttccatgatcgaaccgatcaaa
cgcattttggaagcattccacattccggtattattgctcgaagggtttgaagcggatgat
attatcggaacattagccaaacgcgccgaagaagaaggttttatcacttatatgatgacg
cccgataaagatttcggtcagttggtcagtgaaaatatttttatctacaaaccgggccgg
ggcggtgatcctgcttcggtaatgggcgtgaaggaagtctgcgagaaattcgaagtcagc
aacccgatgcaagttatcgatattctcggtttgtggggcgatgcggtcgataatattcct
ggaattcccggagtcggtgaaaaaacagccaaaaagctcatccaggattacggttccatg
gaagaattgttcaaaaacacggacgacctgaaaggaaaaatgaaggaaaacgtgatcgcg
ttcgaagaacagggacgactttccaaaatgctggctaccattattgtagatgttccggtg
ccgtttgatccgcttgatctgcgtctggacaaacccgataccgaaaaagtaaaggaaatt
tttaccgaactcgaattccgtaatctcgcaaaacgcgtaatcggagaagaaatcgtggtg
acctcgtctgctaacggagaaaacggccagttggatctgtttggtacgcaaagcctggtg
gaggtgcagcaagcttctccaaccgccggttacaagaccatcgcgaccgaaaaaccaagc
taccaccatgtttcgctgccggaagaacgtgcggaattactggcaaaactgatgaagcaa
acttccgtgtgttttgatacggaaacaactgatatcgaagcaatgcatgccgatttggta
ggagcttccttctgttttaaagagcgcgaagcctattatgtttcgttcccgaaagagttc
gatgccgctaaaaaaatcattcacgagtttgcaccgttttttcagtcgaaaaccattgag
aaaatcgcgcacaacctgaaatacgacatgaaagtgttgatgcggtacgatttgcagtta
gacggaccgttgttcgatacgatggttgcgcattacctcattcaacccgaagccaagcag
ggaatggatttcctggcgcaatattacttgcaataccagccggttagtatcgaaacactg
atagggaagaaaggcaaaaaccagggaaatatgggcgatttaccgcaggaacaaattgtg
gattacgcctgtgaagatgccgatattacgttccagctgaaacaattgtttgcaccgcaa
atcgagaaagatcacctgcgtcatttgttccacacgattgaaatgccgttggtgaccgtg
ttggcgaaaatggaaaacgaaggtgtggccattgatgtggatcatttgaaaaactattcc
aaacaattggaaatggaaaccggcgaactggaaacgagcatcaaagccgaagccggaatg
gatttcaacctcgattctccgaaacaactgggcgaagtattgtttgatcacatgaagatt
tcgtcgaaagcgaagaagacgaagacaggtcaatacgccacctcagaagatattttgcaa
cagcataaaagcgatcatccgattatcggaatgatcctcgattaccgccagatgcgtaag
ctgaaatcgacgtatgtagatccgcttcctacgatgctggatcgggtagacggccgcgtt
cacacgagttttatgcaaaccgttacggcaaccggacgtttgagttccaacaatcccaat
ttgcagaatattccgattcgcaccgaccgcggaaaggaaatccgtcgtgcatttattgcc
cgtgataccaatcatcaactgatgtcggccgattattcccagatcgaattgcgtgtaatt
gcggcgttgagcaacgatacatcaatgattcaggcgtttaaagatggtgtcgatattcac
aaagcaaccgcttcgaaagtattccatacgccgttggaagaagtgactaaagagcaacga
agtgcggccaaagcggtgaacttcggaattatttacggtcaatcggctttcgggttgtca
caaaacctgggaatcagtcgcaccgaagccaaacaaatcatcgacagctattttgcacaa
tattccaccatcaaaggttacatggacaacgcagtgaaaaacgcgcgcgaaaacggttat
gtggaaacgatcatgcagcgccgccgttaccttcctgacattaactctgccaatgcagtg
gtacgtggttttgccgaacgaaatgccattaatgcacccattcagggctcggcagctgat
atcgtgaaactggcgatggtagcagtcgacaaagcgatgacagaagccaacgtacaatcc
aaaatgatcttacaggtacacgatgagttggtgttcgatattctcaaaggcgaagaagaa
gtcatgaaaaaactggtaaaaaccgcgatggaaggtgccattcagttggccgttccgatg
gaagtggaaatggaattggcggataattggttggatgcgcactag
DBGET
integrated database retrieval system
