Candidatus Fluviicola riflensis: CHH17_17270
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Entry
CHH17_17270 CDS
T05019
Name
(GenBank) hypothetical protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
flu
Candidatus Fluviicola riflensis
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
flu01011
]
CHH17_17270
Enzymes [BR:
flu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
CHH17_17270
Peptidoglycan biosynthesis and degradation proteins [BR:
flu01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
CHH17_17270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM_RLK
Nif11
Motif
Other DBs
NCBI-ProteinID:
ASS50446
LinkDB
All DBs
Position
complement(4002321..4003946)
Genome browser
AA seq
541 aa
AA seq
DB search
MQVKKQLLHLIIAILSTFLSTAAVAQGYPPVKDTLSGVAFSRMVEQSLSSYYAELASNGS
TDSIVDALAYEAGAIPQFTDDEYCKRLAKMNEVSSFGFECNNVSLTTIKFFAEKRRNFAK
VVLGRSKLYFDLYEEKLAEYDLPLELKYLSVIESGLRPQVKSRAGALGLWQFMYATGKQY
GLSENSYIDERMDPVKATDAACRYLKKLFSIYNDWNLALAAYNAGPGNVNKAIKRSGGKR
TYWEIRPFLPSETQGYVPNFIAATYLLTYHAEHNIVPAESKIHYYQLDTMCLNSGIHMQT
IDKLVGWTPEDIQSLNPVYKTTYIPPTYPQQCITGPLEKIGLLVSLEDSLYITERRLYGA
GNTIPVKTTPPTNNNADQMVVSNPVVVKEIPKTKVVTTINYTYHRVKTGESLGKIAAQYS
VSIQEIMDWNQLTSTRINVGQMLKIQTKVTTTIENPEYLQQQDSLRVNGSDSLKPVIQTP
VNTPPKPQPKPEVRKKYYSVRSGDTFSAIASRHGLTVTQLKKLNPGVNASRISVGQKIRT
K
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtaaaaaaacagcttctccacctgatcatcgccatcttatcgacattcctttca
actgccgcagtggcacaaggatatcctccggtaaaagataccctgagcggagttgctttt
agccgcatggtcgaacaaagcctttcttcttattacgcagaactggcttccaacggatca
accgattctattgtggatgcattggcttatgaagccggagcgattccacagtttacggat
gatgaatactgcaaacgtttggcgaaaatgaacgaggtttccagtttcgggtttgagtgc
aataacgtttcgctcacaaccattaagttttttgccgaaaaacgccgcaattttgcgaaa
gtggtattgggccgatcaaagctgtacttcgatttatacgaagagaaactggctgaatac
gatcttcctttagagttgaaatacctttcggtaattgagagtggtttacgtccgcaggta
aaatcgcgtgccggagcattgggcttgtggcaattcatgtacgctaccggaaaacaatat
ggtttatcggaaaattcgtatatcgacgagcgcatggatccggtgaaagcaaccgacgct
gcctgccgttacctgaaaaaactattcagcatttacaacgactggaacctggcgcttgcg
gcttacaatgcaggtccggggaatgtgaacaaagccattaaacgttcgggtggaaaacgc
acttattgggaaatccggccgtttttaccttccgagacacaaggttacgttccgaatttt
atcgcagcgacttatttactgacatatcacgctgaacataacattgttccggccgaatcg
aaaattcactattaccagttggatacgatgtgtctgaacagcggaatccacatgcaaacc
attgataaactggttggctggacacctgaagacattcagtcgctgaacccggtttacaaa
acaacatacattccaccgacgtatccgcagcaatgtatcaccggcccgctggaaaaaatc
ggtttgctggtaagcctcgaagattcgttgtacatcaccgagcgacgtttgtatggtgca
ggaaataccattccggtaaaaaccactccgcctacgaataacaatgctgaccaaatggtg
gtttcgaatccggtagttgtcaaggaaatcccaaaaacaaaggtcgttacgactatcaat
tacacgtatcaccgtgtaaaaacaggcgaaagtctcgggaaaattgcagcacaatacagc
gtttccatccaggaaatcatggattggaatcaattgacgagtacgcgtattaatgtggga
caaatgctgaaaattcagaccaaagtcaccacgacgattgaaaacccggagtatttgcag
caacaggattcattgcgggtaaacggatcggattccctgaagccggttattcaaacgcct
gtaaacactccgccaaaaccgcaaccgaagccggaagtgcgtaaaaagtattactctgtt
cgttcaggtgatacgttttctgccattgcaagccgtcatggtttaacggtaacgcagttg
aaaaaactgaatccgggagtgaacgccagccgtatttctgttggacagaagattcgtacg
aagtaa
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