Candidatus Fluviicola riflensis: CHH17_18685
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Entry
CHH17_18685 CDS
T05019
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH17_18685 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flu03019
]
CHH17_18685 (rnr)
03016 Transfer RNA biogenesis [BR:
flu03016
]
CHH17_18685 (rnr)
Enzymes [BR:
flu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHH17_18685 (rnr)
Messenger RNA biogenesis [BR:
flu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHH17_18685 (rnr)
Transfer RNA biogenesis [BR:
flu03016
]
Prokaryotic type
tRNA degradation factors
CHH17_18685 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Spindle_Spc25
S1CSD-TOTE-2
OB_HELZ2
TPR_Epg5
Motif
Other DBs
NCBI-ProteinID:
ASS50717
LinkDB
All DBs
Position
complement(4360204..4362351)
Genome browser
AA seq
715 aa
AA seq
DB search
MGYKRPKKQKDTKDKKLKTSLFHIIRRLFQQQPDALLNYKQVCMLLHIKDGESRKLVVTI
LTELNKEGFLKQDGHATYRYSNTQEIVQGELELTQRGSGFVVIDKKSTDIFIPPHAIGQA
IHGDTVKVVITKRGTDRSEGRIVEVVSRERTQFVGTIVMKDKFAMLLPDNSRTGVEIIIA
KENLNGAKNKDKALVKITVWPKTSEHPFGEVIQTLGGNSLHDNEMLSILVSHGLDIEFDA
TVMSEAEQVTMALDPEEVAKRRDFRDILTFTIDPVDAKDFDDALSVKKLENGRWEIGVHI
ADVSHYVRPESAMDKEALKRGNSVYLVDRVIPMLPEQLSNMVCSLRPNEDKFTFSAVFEL
DENGKIYNEWFGKTVIHSDHRFAYEDAQVILEGADGPYKAELHLLDKIAKTLRKARFKKG
ALMIASEEIRFQLDEKREPIGVMVKVSKDANQLIEEFMLLANRRVASFVGEPKKGRDIIP
FVYRCHDKPDPEKIALFNVFIDHFGYELEFSTPEQVAKSINKLLEDIRLTNEFSIIQQMA
IRSMAKATYETLNIGHYGLAFEYYSHFTSPIRRYADLMVHRILLETLENKPHKYNSVLDD
VCKRISRQERKATEAERESNKYFQVVFVHDKIGEEFEGIVTGVAEFGLFVRMNENACEGM
VPLQEIPGDRFSFDPKKYVIVGQKTGKVYNFGDTVKVKITEVHPRRRQIDLALVV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgggctataaacgaccgaagaagcaaaaagacacgaaagacaagaaattaaaaacgagt
ctttttcatattatccgcagacttttccaacaacaacccgatgctttgcttaattacaag
caggtatgtatgttactgcacataaaagatggtgaatcacgaaaattggtggttaccatc
cttaccgaactcaataaagaaggtttcttaaaacaagacggccacgctacatatcgttat
tccaacacgcaggaaattgttcagggtgaactggaactgacgcagcgaggatcgggtttt
gtagtgatcgacaaaaaatcaacagacatttttattccgccccatgctatcggacaagcc
attcatggtgatacggtaaaagtggtcattaccaaacgtggcacggaccggagtgaagga
agaattgttgaagtggtttcgcgcgaacgcacgcagtttgtggggaccattgttatgaag
gataaatttgccatgctgctaccggataattccagaacaggtgtagaaattattatcgca
aaggaaaacctcaacggcgccaaaaacaaggataaagcgctggttaaaatcactgtttgg
cccaaaacatctgaacacccgtttggtgaagtgatccaaacgctgggcggaaattcgctc
cacgacaatgagatgctgagcattttggttagccatggtttggatatcgaatttgatgca
actgtcatgtcggaagccgaacaggtaacgatggctcttgatccggaagaagttgccaaa
cgtcgcgatttcagagacattctgacgtttacaattgaccccgttgatgccaaggatttt
gatgatgcgttgtcggtgaaaaaactcgaaaacggccgctgggaaattggtgtgcacatt
gctgacgtaagtcattatgtgcgtccggaaagcgccatggacaaagaagcactcaagcgc
ggaaactcggtttatttggtcgaccgtgtgattccgatgttgccggaacagctttcaaat
atggtgtgttcactcagaccaaatgaagataaatttaccttttcggcggttttcgaactg
gatgaaaacgggaagatctataacgaatggttcgggaaaaccgtgattcattcagaccat
cgttttgcttatgaagatgcgcaggtgattctggaaggagcagatggtccatataaagcc
gaattgcatttactggataaaatcgctaaaacactacgcaaggcacgtttcaaaaaaggt
gcactgatgatcgcttcggaggaaattcgtttccagctcgatgaaaaacgcgagccaatc
ggtgtaatggtaaaggtgtcaaaagatgccaatcagctgatcgaagaattcatgttgcta
gccaaccgaagagtcgcttcatttgtgggtgaaccgaaaaaaggtcgggatattattccg
tttgtttatcgttgtcacgacaaacctgatccggaaaaaattgcgttgttcaatgtgttt
atcgatcatttcggttacgaactcgagttttcgactccggaacaagttgccaaaagcatc
aataaattgcttgaagatattcgcctgacaaacgaattcagtatcattcagcaaatggct
attcgcagtatggcgaaagcaacttacgaaacgctcaatatcggtcattacggtttggcg
tttgagtattattctcactttacttcgccgattcgccggtatgccgatttgatggttcac
cgcattttgctggaaacactggaaaacaaaccccacaaatacaactcggtgttggatgat
gtgtgtaaacgcatttcccgccaggaacgcaaagcaactgaggccgaacgcgaatcaaac
aagtatttccaggtggtgtttgttcacgataagatcggggaagaatttgagggaattgtt
acaggtgttgccgaattcgggttgtttgtgcgcatgaacgaaaacgcgtgtgagggaatg
gttccgctacaggaaattccgggcgaccgctttagtttcgacccgaagaaatacgtaatc
gtgggccagaaaaccggaaaggtttacaacttcggtgatacggtaaaagtgaaaataacg
gaggttcacccgcgcagacgccagatcgatttggcgctggtggtctga
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