Flavihumibacter rivuli: KJS94_03090
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Entry
KJS94_03090 CDS
T08011
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flv
Flavihumibacter rivuli
Pathway
flv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJS94_03090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flv03019
]
KJS94_03090
Enzymes [BR:
flv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJS94_03090
Messenger RNA biogenesis [BR:
flv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KJS94_03090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
HEM4
Motif
Other DBs
NCBI-ProteinID:
ULQ57183
LinkDB
All DBs
Position
complement(696577..697875)
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AA seq
432 aa
AA seq
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MLFEQLSLIEPILKALEHEGYTQPTPIQSKAIPNILQGRDLLGCAQTGTGKTAAFAIPMI
QLLMAKKSQQPGYKGIKALILTPTRELAIQIKESFKAYGRFTPLRHTVIFGGVSQEKQVQ
ELRRGIDILVATPGRLLDLMQQKIVSLKDIEFLVLDEADRMLDMGFVHDVKRIITNVPAQ
RQTLFFSATMAQEIRSLANTMLRDPAYVEVTPVSSTAEKVEQSIYHVDKIKKQDLLVHLL
ESPEIDQALVFTRTKHGADKVVKGLNKAGITAEAIHGNKSQNARQRALGNFKDKTTRILV
ATDIAARGIDFEQLTHVFNFDLPNIPETYVHRIGRTGRAGYSGIALSFCDREERPFLRDI
EKTTKLSIPVVQEHPYLPQPGEQPAIARPLQPNQGRNPYRSGNKPSGNKQAARPGGHFHS
ERKTKNYDKHSN
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
ttgttatttgaacaattatcgctcattgagcctatcttaaaagcgcttgagcatgagggt
tatacacaacccacccccattcagtcaaaagccattcccaatatcctgcaaggacgcgac
ctgcttggttgcgcacagacaggaacaggtaagacagcagcatttgccatcccgatgatc
caattgctgatggccaaaaagtcacagcaacccggttacaagggtatcaaggcattgatc
ctgaccccaacgagggaactggccatacagatcaaagagagttttaaagcctacggaagg
tttacgcctttgcgccataccgttattttcggcggcgtgtcacaggagaagcaggtgcag
gaattgcgcaggggaatcgatatccttgtcgccactcccggccgtttgcttgacctgatg
caacaaaagatcgtcagcctgaaggatattgaattcctggtactggacgaagccgacagg
atgttggacatgggatttgtgcatgatgtaaagcgcatcatcacgaatgtgcctgcccaa
aggcaaaccctgttcttctccgccaccatggcgcaagagatcaggagcctggccaatacc
atgcttcgtgacccggcctatgtggaagtgaccccggtctcttcaaccgccgagaaagtg
gaacaatccatttaccatgtggacaagataaaaaaacaagacctgctggtccatttactg
gaaagcccggagatcgatcaggcgctggtctttacccgcaccaagcatggcgcagacaag
gtagtgaagggcctgaacaaggccggcattactgcggaagccatccacggtaacaaatca
cagaatgcacgccagcgggcactgggcaatttcaaagacaagaccaccaggatcctggta
gcaacggatatagccgcacgcggtatcgacttcgaacagcttacccatgtattcaatttc
gaccttcccaatatccccgagacctatgtacaccgtatcggccgtacgggaagggcaggg
tatagtggtatagccctatcattctgtgacagggaagaaagacctttcctgcgcgatatt
gagaaaacgaccaagttgagcataccggtggtacaagagcacccctaccttccccagccg
ggtgaacaaccggccattgcaagacccttgcaacccaaccagggaaggaatccatacagg
tcaggcaacaagccatcaggcaataagcaagcagcaaggcctggcggacattttcattca
gaaaggaaaacaaaaaattatgacaaacattcaaattga
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