Flavihumibacter rivuli: KJS94_05850
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Entry
KJS94_05850 CDS
T08011
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
flv
Flavihumibacter rivuli
Pathway
flv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJS94_05850 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flv03019
]
KJS94_05850 (rnr)
03016 Transfer RNA biogenesis [BR:
flv03016
]
KJS94_05850 (rnr)
Enzymes [BR:
flv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KJS94_05850 (rnr)
Messenger RNA biogenesis [BR:
flv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KJS94_05850 (rnr)
Transfer RNA biogenesis [BR:
flv03016
]
Prokaryotic type
tRNA degradation factors
KJS94_05850 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_RNR_1st
S1
OB_Dis3
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ULQ57721
LinkDB
All DBs
Position
complement(1321137..1323149)
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AA seq
670 aa
AA seq
DB search
MSKKKQSKKKSRKKSSTPATLKGRLDITRSGMGFVIVEGQEQDILIRPSDFNTAMHGDTV
RVRITKESGRSGRMQGVVTEVVDRKQSVFMGKIELSKSFAFFIADSDKPMPDVYVPLSNL
NGAKNGERVVLRILEWEQNKKPVGAVVEVLGEHAENDLAMREIILESGFPLNFPEEVLEE
TARIPDILSSAEIKRRRDCRDILTFTIDPVDAKDFDDALSIRELKNGHYEIGVHIADVSY
YVEPETELDKEAYHRATSVYLPDRVNPMLPEKISNELCSLRPHEDKFTFSAIFQISPKGE
LKDYWLGRTVIHSDHRFTYEEVQEIIESGDGLYKEELLLLNTLAQKFRKQRFKKGAINFT
SQEVRFKLDENRKPIGIMIKESKEAHQLIEEFMLLANRTVAEHISKAGEGKKKVPFPYRI
HDQPDEEKLTPFVAFAMKFGHKFDTKSPERIAASFNQLLQDVSGRPEQHVLEQLGIRTMA
KAIYTTENIGHYGLGFENYCHFTSPIRRYPDVLAHRVLQQVLDGELPVDKKMEEKCKHCS
ERERAAMEAERASNKYKQVEYMKNFLGEEFDGVISGVAAFGFWVETVEHKCEGLVSIHSL
LEYDDFAHVESEYMLAGRRSGRTFRMGDKVRIRVVAANLDKRQLDYEWVITAALKEESPT
ARKRVGKGKK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaagaaacaatccaaaaagaaaagcaggaaaaaatcttctactcccgcaacg
ctgaaaggccggttagatattacccgaagcggaatgggatttgtgatcgttgaaggccag
gagcaggatatactcatacgtccatccgatttcaatacagccatgcacggtgataccgta
agggtcaggatcaccaaggaaagcgggcgtagtggccggatgcagggcgtggttaccgaa
gtggtggacaggaaacaatctgttttcatgggcaagatcgaattatcgaaatcatttgcc
ttcttcatagccgattctgataaacccatgcccgatgtatatgtgcccttatccaacctt
aatggtgccaagaatggcgagcgggtggtgctaaggatcctggaatgggagcaaaacaag
aaaccggtgggtgcggtagtggaagtattgggcgagcatgcggagaatgacctggccatg
agggagatcatcctggagagtggcttcccgctgaatttccctgaggaggtattggaagaa
acagcaaggatacccgatattctatccagtgcagagatcaagcgccgcagggattgcagg
gatatcctgaccttcaccattgacccggttgatgccaaggattttgatgatgccttatcg
atccgtgaattaaagaacgggcattatgaaataggcgtacatattgctgatgtaagttat
tatgtagaaccagagacggaactggacaaggaagcctaccaccgggctacatcggtatac
ctgcccgatagggtgaatcccatgttgccggaaaagatctctaatgaattatgttcctta
agaccgcatgaggataagtttactttttctgccattttccagatatctccaaagggcgaa
ctgaaggattactggttgggaaggaccgtgatccattccgatcatcgctttacctacgag
gaggtgcaggagatcattgaaagcggggatggcttgtataaggaagaattattgctcctg
aatacattggcgcaaaagttcaggaaacagcggtttaagaaaggggccatcaatttcact
tcgcaggaggtaaggttcaaactggatgagaaccgtaagccgatcggtatcatgatcaag
gagagcaaggaggcgcatcagctgatcgaagagttcatgctgttggccaaccgaacagtt
gcggaacatatcagcaaagcgggtgaaggcaagaagaaggttcccttcccttaccgtatc
cacgaccagcctgatgaagaaaagctgaccccatttgtggcctttgcgatgaagtttggc
cataagttcgatacgaaatcacctgaacgtatcgctgcttccttcaaccaattgttgcag
gatgttagcggaaggccggagcaacatgtattggagcaactgggcatccgcacaatggcc
aaggctatttacactaccgagaatattggccactatggcctgggattcgagaattattgc
catttcacctcacctatccgtcgatatcccgatgtgttggcccatcgtgtcctgcagcag
gtgttggacggagagttgcctgttgataagaagatggaagagaaatgcaagcattgcagc
gaaagggagagggctgccatggaagcggagcgggctagtaataagtataagcaggtggaa
tacatgaagaatttccttggggaggagttcgatggggtgatcagtggtgtggctgctttt
ggcttctgggtggaaacggtagaacacaaatgcgaaggattggtgagtatccattccttg
ctggagtatgacgacttcgcacatgttgaatcggaatatatgctggccggcaggagaagt
ggccgtaccttccggatgggtgacaaggtccggattcgggtggtggcggccaacctcgac
aaacgccaattggattatgaatgggtgatcactgctgccctgaaggaagaatccccaact
gccaggaaaagggtgggaaaagggaaaaagtaa
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