Flavihumibacter rivuli: KJS94_07195
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Entry
KJS94_07195 CDS
T08011
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flv
Flavihumibacter rivuli
Pathway
flv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJS94_07195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flv03019
]
KJS94_07195
03009 Ribosome biogenesis [BR:
flv03009
]
KJS94_07195
Enzymes [BR:
flv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KJS94_07195
Messenger RNA biogenesis [BR:
flv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KJS94_07195
Ribosome biogenesis [BR:
flv03009
]
Prokaryotic type
rRNA helicases
KJS94_07195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
YwpF
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ULQ57985
LinkDB
All DBs
Position
1638372..1640045
Genome browser
AA seq
557 aa
AA seq
DB search
MSTFEALGLDERLVKATTSLGFTSPTAIQEKAIPVLLSGTKDFIGLAQTGTGKTAAFGLP
LLQLITPSNKYPQALIVCPTRELCMQIVNEMSLFKQHLAGVQVLAVYGGSSIGMQIRDLK
KGVQIVVATPGRLIDLIERKAINLEKIEYVVLDEADEMLNMGFQDDIEFILKNTPNREST
WLFSATMPPEIRKVSKKYMKDPAEVQVGKVNTANKNIDHQYYVTTAQHRYEALKRLIDFN
PGMYGIIFTRTKMEAQEIAEKLTREGYDIDALHGDLTQGQRDKVMGQFRDKSLQLLIATD
VAARGIDVTGITHVINYELPDDIEVYTHRSGRTGRAGKTGVCMSIVHAREVYKIKSIERM
VQANFHKLEIPTGKDVCRKQFFFFIDKLVQADISHGDYETYIPMLQEKFADMSKEEILTR
VAALEFDRFLKYYENAEDLNVREDKRSNRLAGARDQGSSRDHGRKRDTQGREFTGGNGFT
KLFVNLGTKDGFYKASFLQYILDMSELRKEVLGRIDMKEMNSWIEIDKSQANRMIKALDG
KTYKGRKIRMNEASQRG
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatttgaagcgctgggacttgacgagagactggtaaaagcgacgacatcatta
ggatttacttctcccaccgcgattcaggaaaaagccattccggttttattgagtggcaca
aaggatttcattggcctggcacagaccggcacaggtaaaacagccgcattcggcttaccc
ctgttacaattaatcacaccttccaacaaatatccccaggcattgatcgtatgccccacc
agggaactttgcatgcagatcgtgaatgagatgagcctgttcaagcaacatttagcagga
gttcaggttttggcagtatatggcggttcttccatcggtatgcagataagggatctcaag
aaaggtgtccagatcgtagtggctacacctggccgactgatcgacctcatcgagcgcaag
gccatcaacctcgaaaagatcgaatacgttgtgcttgacgaagcagatgaaatgctgaac
atgggtttccaggatgacattgaattcatcctgaagaacacccctaaccgtgaaagcacc
tggttgtttagcgctaccatgccgccagagatcaggaaggttagcaagaagtatatgaaa
gaccctgcagaagtgcaggttggcaaggtcaatactgccaataagaatattgaccaccaa
tattacgttacaactgcccagcaccgttatgaagccctgaagcgcctgatcgatttcaat
ccgggtatgtatggtatcatctttaccaggaccaagatggaagcccaggagatcgcggaa
aaactgacacgtgaaggatatgatattgatgcccttcatggcgacctcacccagggacag
cgcgataaggtgatgggccagttccgcgataagagccttcaactgctgatagcaactgat
gtggctgccaggggaattgacgtaacaggtatcacccacgtgatcaattatgaacttcct
gatgacattgaagtatatacccaccgcagtggccgtaccggtcgtgccggaaaaacaggg
gtttgcatgagtattgtacatgccagggaggtatacaagatcaagtctatagaaagaatg
gtacaggccaatttccacaaacttgaaattcctacgggaaaggatgtttgtcgaaagcaa
ttctttttcttcattgacaaactggtacaggcagatatcagtcatggagattatgaaacc
tatatccccatgctgcaggaaaagtttgcagacatgagcaaggaagagatccttacaagg
gtggccgcacttgagttcgaccgtttccttaaatactatgagaacgcagaagacctgaat
gtcagggaagataagcgaagcaaccgactggcaggtgcgcgcgaccagggctccagccgt
gaccatggtcgtaagcgggatacacagggccgtgagttcaccggaggtaatggcttcacc
aagctattcgttaacctcggtaccaaggacggtttctataaggcaagtttcctccaatac
attttggacatgagtgaactgagaaaggaagtattgggaaggatagacatgaaggaaatg
aacagttggatagaaattgacaaatcacaggccaacaggatgatcaaggcactggatgga
aagacctataaaggaaggaagatcaggatgaacgaggccagccagagaggttaa
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