Flavihumibacter rivuli: KJS94_13820
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Entry
KJS94_13820 CDS
T08011
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
flv
Flavihumibacter rivuli
Pathway
flv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KJS94_13820 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flv03021
]
KJS94_13820 (rho)
03019 Messenger RNA biogenesis [BR:
flv03019
]
KJS94_13820 (rho)
Transcription machinery [BR:
flv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KJS94_13820 (rho)
Messenger RNA biogenesis [BR:
flv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KJS94_13820 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
AAA
S1CSD-TOTE-2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ULQ58441
LinkDB
All DBs
Position
3242623..3244254
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AA seq
543 aa
AA seq
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MLVPELLDIAEQLKIPNAKKLDKQELIYKILDKQAVLASEVKSTDSGEKTKRKRIVKATT
AHTTEEAVVESEEEKPRKVEQKKPVVKKEEKPAPNKKPRKKPQELPLNEEEEVMPVLPVD
TADEELGSVVAEAEVGDLIRQEAEPAPVMPPVEPQQRPQHHQRREKDYFNIEFDGVIPAE
GVLEMMPDGYGFLRSSDYNYLSSPDDVYVSPSQIKLFGLKTGDTVNGTVRPPKEGEKYFA
LLKVETINGKLPEEVRDRVPFDYLTPLFPFEKLNLFTEPNGYSTRMIDLFTPIGKGQRGL
IVAQPKVGKTVLLKEVANAIAANHPECYLMVVLIDERPEEVTDMERSVRAEVIASTFDEP
AEKHVKVSAMALQKAKRLVECGHDVVILLDSITRLARAHNTVAPASGKVLSGGVEANAMQ
KPKQFFGAARKIENGGSLTILATALIDTGSKMDEVIFEEFKGTGNMELQLDRRLANRRIF
PAIDLVASSTRRDDLLLDRDVLQRMNLLRLYLNDMNTEEAMTELLKRMRGTKSNEEFLAS
MNG
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgctcgttcctgagttgctcgatattgcggagcaactgaaaatccctaatgcaaagaaa
cttgacaagcaggagctgatctacaagatcctggacaaacaggctgttctggccagtgag
gtaaagagtaccgattcaggtgagaaaaccaagaggaaacgaattgtaaaagctactact
gcacataccactgaggaggctgttgtggaaagcgaagaagaaaagcccaggaaggttgag
cagaaaaaaccggtagtaaaaaaagaagaaaagccggctcccaataagaagccgcgcaag
aaaccccaggaattacctttgaacgaggaagaagaagtgatgcctgttttgcctgtagac
actgcagatgaagaacttggatctgtggtagccgaagcggaagttggtgacctgatcagg
caggaagcagaacctgctccggttatgcctcccgttgaaccccagcaaagaccccaacac
caccagcgcagggagaaggattatttcaacatagaatttgatggggttattcccgcggaa
ggcgtattggaaatgatgcctgatgggtatggtttcctgcgcagcagcgactataactac
ttatcttcccccgatgatgtatatgtatctccttcccagatcaagctctttggcctgaag
accggtgatactgtaaacggtacggttcgccctccaaaagaaggggaaaaatattttgca
ctcttgaaggtagagaccatcaatggtaagcttcctgaagaagtgcgtgacagggttcct
ttcgattacctcacccctctgttcccattcgaaaagctgaacctgttcaccgagccaaat
ggttacagcacaaggatgatcgacctcttcacccctataggaaagggccagcgtggactg
atcgttgcccaaccaaaagtgggtaagaccgtcctgttgaaagaagtggccaatgccatt
gctgccaaccaccccgagtgttacctgatggtagtgctgatcgatgaacgtccggaagaa
gtgaccgatatggagcgcagcgttagggctgaagtgatcgcttctacctttgacgaaccg
gcggagaagcacgtgaaagtgtctgccatggcgctccagaaagcgaagcgtttggtagaa
tgcggtcatgatgtggtcatcctcctggattccatcacccgtttggcccgtgcccacaat
accgtggcgcctgccagtggtaaagtgctcagcggtggtgtggaagccaacgccatgcaa
aagcccaagcaattctttggtgcggcccgtaaaattgagaacggtggatcattgaccatc
ctggcaacagccctcattgatactggtagtaaaatggatgaagtgatctttgaagaattc
aagggtaccggtaacatggaattgcagctggataggagattggccaaccgccgtatcttc
ccggccatcgacctggtggcatcgtcaacccgtagggatgacctgctgttggatcgtgat
gttttgcagcgcatgaacctgctgcgtttgtatctgaatgatatgaatacagaagaagct
atgactgaattgcttaagcgtatgcgtggaaccaagagcaatgaagagttcctggccagc
atgaatggataa
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