Flavihumibacter rivuli: KJS94_15440
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Entry
KJS94_15440 CDS
T08011
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
flv
Flavihumibacter rivuli
Pathway
flv02020
Two-component system
flv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
flv00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KJS94_15440 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KJS94_15440 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flv03021
]
KJS94_15440 (rpoN)
Transcription machinery [BR:
flv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KJS94_15440 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_IclR
LacI
HTH_12
AF2212-like
MarR
SF3b1
CTD6
Motif
Other DBs
NCBI-ProteinID:
ULQ56041
LinkDB
All DBs
Position
complement(3641504..3642988)
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AA seq
494 aa
AA seq
DB search
MALSQSLQQKLLQKLSPQQIQLMKLLQVPTANLEERIKEELEENPALELSEENHDENFEE
PRDEFENADDDYETEGSEDEYENIDISEYVQEGDDEIADYKLRDDNYPELEDKQVMPFKI
ENSLHDSLVDQLGMLDLDDRTQKIAEQIVGSIDDDGYLRRETTSIMDDLAFRQNIIATEE
EIEGLIRKIQHFDPPGICARDLQECLLLQLERKLKEGTEVKLAIEVLSRYFDEFTKKHYD
KIQRGLNIDDDQLKSVINQIIKLNPKPGGNVGEVNKAESYVVPDFFIYNNGGKLELTLNS
KNAPDLRISEGYRDMLKEYDKGSKKDKRQKEAVLFIKQKIDAAKWFIDAIKQRQQTLMMT
MQTIMDYQKEFFLTGDETTLRPMILKDIAERTGLDISTVSRVANSKFVQTEFGTYRLKFF
FSESLSTESGEEVSTREVKKILSDMVEGENKRKPLSDERLTELLQEKGYNIARRTVAKYR
EQLNIPVARLRKEL
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcactgagtcaaagtttacaacaaaaactattacaaaagctttcccctcaacaaatc
cagttgatgaagctgctccaggtgccaacagccaacctggaagagcggataaaggaagaa
ctggaagagaacccggcactggaactgagcgaagagaaccatgatgaaaactttgaggaa
ccgagggacgaattcgagaatgctgatgacgattatgagaccgaaggcagcgaagatgag
tatgaaaatattgacatcagcgaatatgtacaggaaggtgatgacgaaatagccgattat
aagctcagggatgataattatcccgaattggaggacaagcaggtaatgccttttaagata
gaaaactccctccatgactcactagttgaccagctgggcatgcttgacctggacgaccgc
acccaaaagatcgcagaacaaattgttggaagcattgatgatgatggatacctgaggcgg
gaaaccacctccatcatggacgaccttgcctttcgccagaatattatcgccactgaagag
gaaattgaaggcctcatacgcaagatccagcatttcgaccctcccggtatttgcgcccga
gacctgcaggagtgcctgctactccagttagaaagaaagctaaaggaaggaacagaagta
aagctggccatcgaagtactcagccgctatttcgatgagttcaccaagaagcactacgac
aagatacagcgtggactgaatatcgatgatgaccaactcaagagtgtcatcaaccagatc
attaagctgaaccccaagcctgggggcaatgtcggcgaagtaaacaaggccgaaagctat
gtggtgccggacttcttcatctataacaatggcggcaaacttgaactgaccctgaatagc
aagaacgcacccgacctgcgcattagtgaaggttaccgcgatatgctgaaagaatatgat
aagggcagcaagaaggataagcgacagaaggaggcggtgcttttcatcaagcagaaaatt
gatgcggccaagtggttcatcgatgccatcaaacaaaggcaacagaccctgatgatgacc
atgcaaaccatcatggattaccaaaaggagttcttcctgactggcgacgaaactaccttg
cggccaatgatcctgaaggatatcgccgaaaggaccggactggatatttccactgtcagt
cgtgtggccaatagcaagtttgtacagacagaattcggcacctaccgactgaaattcttc
ttcagcgaaagcctgagcacggaaagcggggaagaagtatctaccagggaggttaaaaag
atcctgagtgacatggtggaaggggaaaataaacgcaagccccttagtgatgaacggctg
actgaacttttacaggaaaaaggttataacattgcacgcagaacagtggccaaataccgg
gaacaactgaatataccggtagcccgtttgagaaaggaattgtaa
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