Fulvivirga ligni: LVD16_00915
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Entry
LVD16_00915 CDS
T09288
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
flw
Fulvivirga ligni
Pathway
flw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVD16_00915 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flw03021
]
LVD16_00915 (rpoC)
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_00915 (rpoC)
Enzymes [BR:
flw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVD16_00915 (rpoC)
Transcription machinery [BR:
flw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVD16_00915 (rpoC)
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVD16_00915 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
RPOC_hybrid
MCM_C
Motif
Other DBs
NCBI-ProteinID:
UII21797
LinkDB
All DBs
Position
complement(197620..201921)
Genome browser
AA seq
1433 aa
AA seq
DB search
MSFRKNKKLNLDFSKVTISLASPESILESSHGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVIQPGVKEEDGLAKMDFLTEDEYLDILDKMPRENQLLDD
DDPNKFIAKMGAEALEMLLARTDLDTLSYDLRHQAATDTSQQRKAEALKRLKVVEAFREA
KTRIENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSDGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKSMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDP
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAVLEASLLMLSSHNILNPANGAPITVPSQDMVLGLYYVTKGRRGTEEVPVM
GEGMTFYSAEEVIIAINEKQLSKHAYIKVRGKVRNEKGELEDKLIETVAGRVLFNQHVPE
EVGYVDELLTKKKLQQIISDVFKVSGMARTAHFLDDIKELGFQMAYKGGLSMGLNDVAIP
EEKEALVAQAKEEVDAVWNNYLMGLITDNERYNQVIDIWTRINTQLTNTLMTQLAEDEQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLAGSVGAIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVAQDLVITEDDCGTLRGLTVTALKDNEDI
VEALSERILGRVSVHDVYDPITDELICESGTEITEEIAKTIDESNIEEVEIRSLLTCETK
QGGCAKCYGRNLATGRMVHAGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVDANIK
AKFDGKIEFEGIRTIKTTDKDGESVEVIMGRTGEVKVVDEKKGTVLMTNHVPYGAFLKVK
EGQKVAKGEELVYWDPYNAVILGEFDGTIEFESIIEGITYKEESDEQTGHREKVITDTKD
KTKNPAIKINGKNDGKSYNIPVGAHLAVEDGAKIKAGQILAKIPRTMGKSRDITGGLPRV
TELFEARNPSNPAVVSEIDGVVTYGGIKRGNREIFIESKDGIKKRYLVSLSKHILVQDND
FVKAGYPLSDGAITPADILAIKGPTAVQEYLVNEIQEVYRLQGVKINDKHIEAIVSQMMQ
KVQILDSGDTSFLTNEIVDKFVFGEENDLVLDKKVVTDAGDSENFRPGQIITPRELRDEN
STLKRKDLKLVEVREAMPAVSKPTLQGITQASLKTESFLSAASFQETTKVLSEAAIRGKA
DHLLGLKENVIVGHLIPAGTGQRSFKDVIVGSQDEYDELVSSKEESKQRELQN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcagaaagaataaaaagctaaacctcgatttctctaaggttactatcagtttg
gcatcacctgagtctatcttagaaagctctcatggtgaagttactcaaccggaaacaatt
aactacagaacatataagcctgaaatgggtggattgttctgcgagcgtattttcgggcct
gtgaaagactgggagtgtcactgcgggaaatacaagaggatacgatataaaggtataatt
tgtgacagatgtggagttgaagttactgagaagaaggtaagaagagaaagaatgggacac
attgaacttgtggttcctgtagctcacatctggtatttcaagtctttgccaaacaaaatt
ggatatttattaggcttaccaactaagaagcttgatcaaattatctattatgaaagatat
gtagttattcaacctggtgttaaagaagaggatggtcttgctaaaatggacttccttaca
gaggatgagtatctagatattcttgataaaatgcctagggagaatcagcttttagatgat
gatgatcctaacaaattcatagcaaaaatgggagctgaggctcttgaaatgctattagct
agaactgaccttgatactctttcttatgacttgagacatcaggctgctacggatacttct
cagcaaagaaaagcggaagctttgaaaagactgaaagtagttgaggcattcagagaagct
aaaacaagaatcgagaacagaccagaatggatggtgattagaatggtgccggttatacca
ccagaattgcgtccattagtacctcttgatggaggtaggtttgctacttcagatttgaat
gatctttacagaagagttattatcagaaataaccgtctgaaaagacttatcgatattaaa
gctccagaagttattcttagaaatgagaagagaatgcttcaggaagctgtggattcactt
tttgacaactcaagaaaagtaaatgctgtaagatctgatggtaacagagcattgaaatct
ttaagtgatatgcttaaaggtaagcaaggtcgtttccgtcaaaacttacttggtaaaagg
gtagattactctggtagatctgtaattgtggtaggtccagaattaaaactacatgagtgt
ggtttacctaaatcaatggcagctgagcttttcaaaccatttattatcagaaaactgatt
gaaagaggtattgttaaaactgtgaaatcagctaagaagattgttgatagaaaagatcct
gtggtatgggatatccttgaaaacgtattgaaaggacatccagtattacttaacagggct
cctacgcttcaccgtttaggcattcaggctttccaaccaaagcttattgaaggaaaggct
attcagttgcacccattagtatgtacagcattcaacgctgactttgatggtgaccagatg
gctgttcacgtaccgctaggacaagaggctgtattggaagcttctctattaatgttatca
tctcataacatacttaacccagctaacggtgcacctattacagtaccttctcaggacatg
gttcttggtttgtattatgtgactaagggaagaagaggtactgaggaagttccagttatg
ggtgaaggaatgaccttctatagcgcagaagaagtaatcatcgctattaatgagaagcag
ctttctaagcatgcttacattaaagtgagaggaaaagttagaaacgaaaagggagagtta
gaagataagcttattgaaactgttgcgggtagagttttattcaaccagcatgtacctgaa
gaggttggttatgttgacgagctattgactaagaaaaagcttcagcagattatttctgat
gtatttaaagtatcaggaatggctagaacagctcacttccttgatgatattaaagaatta
ggtttccaaatggcctacaaaggtggtctatcaatgggacttaatgatgtagctatccct
gaagagaaagaagctctagtagctcaagctaaggaagaggtagatgcagtttggaataac
tacttgatgggtcttattactgataatgagagatacaatcaggtaattgatatctggaca
agaattaacactcagcttacaaacaccctgatgactcagttggctgaagacgagcaagga
ttcaactcaatctatatgatgatgcactccggtgcgaggggatctagagagcagattcgt
cagcttggtggtatgagaggtttgatggctaagccacaaaagaaccttgcaggatctgta
ggtgcgattattgaaaaccctattctttcaaactttaaagaagggctagatgtaattgag
tacttcatctcaacacacggtgctcgtaaaggtctggcagataccgccttgaaaacagcg
gatgctggttacttaactagacgtcttgtggatgtggctcaggatcttgttatcactgag
gatgactgtggaacacttcgtggacttacagttactgctctgaaagataatgaggatatt
gtagaggcattatctgaaagaattctaggtagagtatctgtacatgatgtatatgatcca
attactgacgaattaatttgtgagtcaggaactgagataactgaggagattgctaaaaca
atcgacgaaagtaatattgaagaggtagagattagatctcttctaacttgtgaaactaag
caaggtggttgtgctaaatgttacggacgtaacctggctaccggaagaatggtacatgca
ggggaagctgtaggagttatcgcggcacaatcaattggtgaaccaggtacacagcttact
ttaagaaccttccacgttgggggtactgcatctaacatcgcggtagatgctaacattaag
gctaaatttgacggtaagatagagtttgaaggtattagaaccattaagactactgacaaa
gacggcgaaagtgttgaagtaatcatgggacgtactggtgaggtcaaagtagtagatgaa
aagaaaggtactgtcttaatgactaaccacgtaccttatggagcattccttaaggtgaaa
gaaggacaaaaagtggcgaaaggtgaagagttagtatactgggatccttacaatgctgta
atccttggtgagtttgatggtacaattgaattcgaatctattattgaaggtattacttac
aaagaagaatctgatgagcaaactggtcacagagagaaagtaattactgatacaaaagat
aagactaagaaccctgccattaaaattaatggtaagaatgatggtaaatcatataacata
ccagtaggtgctcacttggcggtagaagatggagctaagattaaagccggacagattttg
gctaagattccacgaacaatgggtaaatcgagagatattaccgggggtcttccaagagta
actgagctttttgaagctagaaacccttctaaccctgctgtagtaagtgagattgatggt
gttgtgacttacggtggtattaagagaggtaatagagaaatctttatcgagtcgaaagac
ggaattaagaagagataccttgtttctttatctaagcacatccttgtacaggataatgac
tttgtgaaggcaggttatccattatctgatggagcgattactccagctgatatcttggct
atcaaagggccaactgcagttcaggaatacttggtgaatgaaattcaggaagtataccgt
ctgcaaggtgtgaagatcaacgataagcacattgaagctatcgttagccagatgatgcag
aaagttcagattcttgattcaggagacactagctttttgactaatgagattgttgataaa
tttgtgttcggtgaagagaatgaccttgtattagataagaaagttgttactgatgcagga
gattctgaaaacttcagaccaggacaaatcattacacctcgtgagttaagagatgagaac
tctacattgaagcgtaaagaccttaaattggtggaagtaagagaggctatgcctgctgtt
tctaaaccaaccttacaaggtatcacacaagcttcattgaagacagaaagcttcttatct
gcagcgtcgttccaggaaacaactaaagtactgagtgaggcggctattagaggtaaagcg
gatcatctattaggattgaaagaaaacgtaattgtaggacacttaatccctgcaggtact
ggacagagatcatttaaagatgtaatcgtaggttctcaagacgagtatgatgagttagtt
tcttcaaaagaggaatctaagcagagagaattacagaactaa
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integrated database retrieval system
