Fulvivirga ligni: LVD16_02335
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Entry
LVD16_02335 CDS
T09288
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
flw
Fulvivirga ligni
Pathway
flw03030
DNA replication
flw03430
Mismatch repair
flw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVD16_02335
03430 Mismatch repair
LVD16_02335
03440 Homologous recombination
LVD16_02335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flw03032
]
LVD16_02335
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_02335
Enzymes [BR:
flw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LVD16_02335
DNA replication proteins [BR:
flw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LVD16_02335
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LVD16_02335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
DNA_pol_A_exo1
RNase_H_2
DUF7508
Motif
Other DBs
NCBI-ProteinID:
UII22069
LinkDB
All DBs
Position
complement(532399..533769)
Genome browser
AA seq
456 aa
AA seq
DB search
MYAIVDIETTGGFAGNGKITEVAVFIHDGEKVIDSYETLINPEQFIPAYISGLTGIDQQM
VDSAPVFGEVAEKLQELLADKIFVAHNVHFDYSFLKKEFEDVGLSFSPKRLCTVRLSRKV
FPGLRSYGLGNLCAQLDINIENRHRAGGDAHATVILFDKMVKSSPEIIADALKRNSKETT
LPPNLPKEEFQNLPELPGVYYFHDQHGNVIYVGKAINIKKRITGHFSGTSKNNRNQFIRN
EIHHISYELTGNELVALLLESQEIKRLWPKYNRAQKVKSNPWAIYKYEDRDGYLRFNIGK
SVKGLMPLMTFHAHNDAWYFVIDKVKEYELCPKLSGIQKSDGACYDVPIGKCKGACGGQE
SVEVYNAKVAEAIQSFYNVEKSFVILGSGRTEDEQAVVLVEKGAYHGFGFCSKDMQVTNL
DDVKTFVKNYKTTVEIDHYIQSYANSSDAQIIEVAD
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgcaattgtagatatagagactaccggaggttttgctggtaatggaaagattaca
gaagtagccgttttcatccatgatggggagaaggtgattgattcttatgaaacccttatc
aaccctgagcaatttatacccgcatatatttctggtcttacgggcatagaccagcagatg
gtagacagtgctccggtttttggggaggtggcagagaagctacaggagttgctggctgat
aaaatatttgtagcccataatgtacactttgattattctttcttaaaaaaggaattcgaa
gatgtaggcctttctttcagtccgaagcgattgtgcactgtacgtttgagtagaaaagta
ttccctggcttaaggtcctatgggttaggcaatctatgcgctcagctggatattaatata
gaaaataggcacagagctggtggagatgcacatgctaccgtcattttgtttgataaaatg
gtaaagtcatctccagagataattgcagatgcactaaaaagaaattctaaggaaactacc
ttacctcctaatttacccaaggaggaatttcaaaacctacctgaactgccaggagtctat
tattttcatgaccagcatggcaatgttatttatgtgggtaaggccattaatattaaaaaa
agaattacaggacatttctcaggcactagtaaaaacaataggaatcagtttattagaaat
gagattcatcacatcagctatgaacttacagggaacgaactggtggcattgttgcttgaa
tctcaggagattaagaggctgtggcccaaatacaacagagcccagaaagtgaaaagcaac
ccttgggctatttataaatatgaagacagagatggctatctaaggtttaacataggtaaa
agtgtaaaaggacttatgccattaatgacttttcatgcccacaatgatgcctggtatttt
gtgatagataaggtgaaggaatatgaactatgcccgaaactttcaggtattcaaaagagt
gatggtgcttgctatgatgtgcccataggcaaatgtaaaggagcttgcggtgggcaagaa
tctgttgaagtctataatgcgaaggtggcggaagccattcagtctttttataatgtagaa
aagtcctttgtgatattaggctcaggcagaactgaagatgaacaggccgtggtattggtg
gaaaaaggcgcctaccatggttttggtttctgcagtaaagatatgcaggtcacaaacctg
gatgatgttaaaacttttgtgaaaaactacaaaaccacggtggagattgaccattatatt
cagagctatgccaatagttctgatgcacagattatagaagtggctgattaa
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