Fulvivirga ligni: LVD16_02485
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Entry
LVD16_02485 CDS
T09288
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
flw
Fulvivirga ligni
Pathway
flw03410
Base excision repair
flw03430
Mismatch repair
flw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LVD16_02485 (recJ)
03430 Mismatch repair
LVD16_02485 (recJ)
03440 Homologous recombination
LVD16_02485 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_02485 (recJ)
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LVD16_02485 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LVD16_02485 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVD16_02485 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UII22097
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Position
561997..563703
Genome browser
AA seq
568 aa
AA seq
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MVEKRWVLKEEPNQDQVDKLSSAINVSEPLAKILIHRGVTDFDAAKTFFRPSLDMLHDPF
LMQDMHIAVERIELAIANNEKILVYGDYDVDGTTSVALFYGFLNSFYFNCDFYIPDRYKE
GYGVSSQAIDWANENDFSLIVTLDCGIKSVELIEKAANLGIDFIVCDHHRPGEVLPPAVA
VLDPKRDDCHYPYDELPGCGIGFKLMQALVSKNPSWYENPLDFLDLVVVSIASDIVPITG
ENRVLAYYGLKKLNTSPSPGLSALMTLAGVKGDINITGVVFGMAPRINAAGRISHAEMAV
NLLLAASEDDAYHYAEKLNIKNKKRKDYDSSITDEAIKMIESDTILQTSKTTVLFKNDWH
KGVIGIVASRCIEHYHRPTIILTESNNKATGSARSVPGFDVYNAISNCSDLLEQFGGHKY
AAGLTLDLNNIAAFQQKFEEEVANTIPEELLIPLINIDDNISFDDITPKFLNIINQMAPF
GPENLRPTFMAENVTVASSLRILKNQHLKFIAKQEGNSKQFDAIGFNMAVYEKDIKQGRP
FKIAFGIEENNYMGRQSIQLKLKDIKFD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaaaagatgggtattaaaagaagaaccaaaccaagatcaggtagataagctt
agctcagcaataaatgtgagtgagccactggccaagatactgatacacagaggtgtcact
gattttgacgctgctaaaaccttcttccgcccatcgctagacatgctgcatgatcctttt
cttatgcaagatatgcacattgccgtagagcgcatagaactagctatagccaataatgaa
aaaatcctggtctacggagattatgatgtagatggcactacttccgtggctctattttat
ggctttctcaattccttttattttaactgcgacttctatattcctgacaggtataaggaa
ggctacggtgtatcttcacaagccatagattgggctaatgaaaatgacttttctctaatt
gtcactttagactgcggtataaaatcagttgaactcattgaaaaggcagccaatcttggg
atagattttattgtttgtgatcaccatcgcccaggtgaggtgcttccaccggcagtggcc
gttttagatcctaaaagggatgattgccattatccttatgatgagcttcccggctgtggc
attggatttaagttaatgcaagcgctggtaagcaaaaatcccagctggtatgaaaatccg
ctggacttcctggatttagtagtggttagcatcgcttcggatattgttcccattactggt
gaaaacagagttctggcttattatggcctcaaaaaactgaacacttctcccagccctggg
ctctcagcgctcatgaccttggcaggcgtaaagggtgatatcaatattacaggtgtagtc
tttggaatggcaccacgcataaatgctgcaggaagaatctcgcatgctgagatggctgtg
aatctgctgctggcggcttcggaggatgacgcttatcattacgctgaaaagctgaatatc
aagaataagaagcgtaaagattatgatagcagcatcactgatgaagccataaaaatgatc
gagagcgataccatattacagacctctaaaaccaccgtcctattcaaaaatgattggcac
aaaggagttatagggatagttgcctctcgctgcatagagcactatcacaggcctaccatc
atacttacagagtctaataacaaagctaccggttcagccagatcagtacccggctttgat
gtttataatgccatttctaattgcagtgatctactggagcagtttggcggacataaatat
gcggcaggtctgactttagaccttaataatattgcggcttttcagcaaaaattcgaagaa
gaagtggccaatactatacccgaagagctccttatccccctcataaatattgatgataat
attagctttgatgacattacaccgaagtttttaaatatcattaatcaaatggcccctttc
ggtccggaaaatctacgtcccacttttatggccgagaacgtaactgtggcaagctctttg
aggatactgaaaaaccaacatttgaaattcatagctaaacaagagggaaatagtaagcag
tttgatgctattggctttaatatggcggtatacgaaaaagacataaaacaaggacgcccg
tttaaaatcgccttcggaatagaagaaaataattatatgggccgccagtctatccagcta
aaactaaaggatataaagtttgattaa
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