Fulvivirga ligni: LVD16_11900
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Entry
LVD16_11900 CDS
T09288
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flw
Fulvivirga ligni
Pathway
flw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVD16_11900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flw03019
]
LVD16_11900
Enzymes [BR:
flw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVD16_11900
Messenger RNA biogenesis [BR:
flw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVD16_11900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
CMS1
Cas3-like_C_2
Flavi_DEAD
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UII23921
LinkDB
All DBs
Position
2772695..2773924
Genome browser
AA seq
409 aa
AA seq
DB search
MNNIKTKKKRSGSNPSFNKSNRGGSGRRQPRKKAVSTLDPNLLIKKAVKVEEEEYVPTRT
FDDMPLDVNLKANIFDKGFRFPTKIQDETLEALLEGTDLIGVANTGTGKTGAFLIPIINQ
MLSNRKSSKALIVVPTRELALQVEEEFKSLSHRLGLYAACFIGGTNLGRDMMRLRKRNHI
IIGTPGRLMDLVGRDALRMDDINTLVLDEFDRMLDMGFVNDIKRMVKLMSRRNHTMLFSA
TVDDTQKALIDTLLNNPVEVKVSSGKTTNENIDQDIIRVAEGEDKFQMLLDLVSGEDFQK
VIVFAETKRMADKIAKKLNQSGVKSDQIHGNKSQNYRQNALNRFKNGQVKILVATDVAAR
GIDVTDVTHVINYQLPLNFDSYVHRIGRTGRGGKVGKAYTFVDEADNKQ
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaataacataaaaacaaaaaagaaaagaagtggtagtaacccttcttttaacaagtcc
aatagaggtggttcgggcagaagacagcccagaaaaaaggccgtttctactttggaccct
aacttacttataaaaaaggccgtaaaagtagaggaagaggagtatgtgcctacccgaact
tttgatgatatgcctttagatgtgaaccttaaggcaaatattttcgataaaggctttagg
tttccaaccaaaatacaagacgaaacattagaggcattacttgaagggactgatcttatt
ggtgtggccaatacaggtaccggaaaaacaggtgcttttttgatacccataatcaatcag
atgttaagcaatcgtaagtcttctaaggcccttattgtggtgcctaccagagagcttgct
ttgcaggtagaggaggagtttaaatcacttagtcatagactagggttatatgctgcttgt
tttatcggtggaactaatttgggtagagatatgatgcgtttgcgcaaaagaaatcatatc
atcattggtaccccgggtagattgatggatttagtgggtagagatgctcttagaatggat
gacatcaacacgctagtgctagatgaatttgatcgcatgcttgacatgggctttgtgaat
gacatcaagagaatggtgaagctgatgagcagaagaaatcataccatgcttttctctgcc
actgtggatgatactcagaaggctctgattgatacattgctcaataatcctgtagaggtg
aaggtgagtagcggaaaaactacgaacgaaaatattgatcaggatatcattagagtagcc
gaaggagaggataaatttcagatgctacttgacttggtttctggagaggattttcagaag
gtaatagtatttgccgagactaaaaggatggcagataaaatagccaaaaagcttaatcaa
tctggtgtgaaatctgaccagatacatggtaataagtctcaaaattatagacagaatgcc
ttaaacagattcaaaaatgggcaggtgaagattttggtggctactgatgtagcggccaga
ggaatcgatgttacggacgtaacgcacgtgattaactatcagctgccattaaactttgat
agctacgttcatagaataggaagaacaggacgtggtggaaaagtaggaaaggcttacact
tttgtggatgaagccgataataaacaatga
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