Fulvivirga ligni: LVD16_12045
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Entry
LVD16_12045 CDS
T09288
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
flw
Fulvivirga ligni
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flw03032
]
LVD16_12045 (topA)
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_12045 (topA)
Enzymes [BR:
flw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LVD16_12045 (topA)
DNA replication proteins [BR:
flw03032
]
Prokaryotic type
DNA Topoisomerases
LVD16_12045 (topA)
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LVD16_12045 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
UII23950
LinkDB
All DBs
Position
2808049..2810361
Genome browser
AA seq
770 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEGYLGKDYKVTSSYGHVRDLPKGDKAIDKENGFKPTYEITADK
KAVIKDLKKLVKDSETIYLASDDDREGEAISWHLKEALNLDDARTRRIVFREITKNAIEN
AIKTPRGIDIDLVNAQQARRVLDRLVGFELSPILWKKIKTGLSAGRVQSVAVRLVVDRER
EIEKFEAKSSFKVTAIFDLGNKKELHAELAHKFETQQEATDFLEACKDADFSIADLQKKP
SKKSPAPPFTTSTLQQEASRKLGFSVSQTMTIAQKLYESGLISYMRTDSVNLSDEAINGA
VEEIKKEFSEEHVQVRKYKTKSSSAQEAHEAIRPTNFANTSPSADRNGQRLYELIWKRAI
ASQMADAQIEKTTATIDISTVPQKLTATGEVIKFEGFLSVYLESSDDEDDNEEQKGMLPP
LTIGQELALDEMKAREGFTRHPARYTEASLVKKLEEMGIGRPSTYAPTISTVQKRNYVVK
EFREGKEREYAVVRLKNKEIKSTKLTEITGTEKNKLFPTNTAMVVTDFLVDHFPNVTNYS
FTAEVEKLFDEIAHGKKEWDKMIEDFYSEFHSKVESTESIERSSVPSSRELGVDPKTGKK
VIARLGRFGPIAQLGDEEDEKPQYASLRQGQFIESITLEDALELFKLPRDLGEFEEKPVQ
ANVGRFGPYVRHNNKFVSIPKGDDDPYTIELDRAIELIKAKREADANKFIKTFEENEDVQ
VLNGRFGPYIKVGKKNVKIPKDKDPKELTLAECLELAEKAPVKKARGKKK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagtaatagtagagtcacctgcaaaggcaaaaacaattgaaggatat
ctggggaaagactacaaagttacctccagttacgggcatgttagggatttacctaaaggt
gataaggctattgataaagaaaacgggttcaagcccacatatgagatcacagcagataaa
aaggctgtgatcaaagatctaaagaaattagttaaggattcagagacaatctacctagcg
agtgatgatgaccgcgaaggagaagccatttcatggcatttaaaagaagctttgaacctt
gatgatgccagaacaagaaggatagtttttagagagattactaaaaatgccattgaaaat
gctataaaaactccaagagggatcgatattgatcttgtaaatgctcagcaagccagaaga
gtacttgacagacttgtaggttttgagctttcacctatcctttggaaaaaaataaaaaca
ggtctatctgctggtagggttcaatctgtagcagtgagattagtagtagacagagagcgt
gaaatagaaaagtttgaagcaaaatcaagctttaaggtgacggctatctttgacctaggt
aataagaaagaattacatgctgagttagcccataagtttgaaacgcaacaagaggccact
gactttttagaggcttgtaaagatgctgatttctctatcgcagacttacagaaaaagcct
agtaaaaagtcgccagcaccaccatttaccacctctaccttacagcaggaagccagtaga
aaattaggattttcagtatctcaaaccatgactatagctcaaaagctttacgaatctggt
ttgatatcctacatgagaactgactcggttaatttatctgacgaggccataaatggtgct
gtggaagagattaaaaaggagtttagtgaagaacatgtgcaagtaaggaaatataaaact
aagtccagctctgcacaggaagctcacgaagccataagaccaactaattttgctaacacg
agcccttcggcagatagaaacggtcaaagattatatgaattgatctggaaaagagcgatt
gcttctcaaatggctgatgctcagattgagaagactacagccactatcgatatttcaacc
gttcctcagaagcttacagccacaggggaagtaattaaatttgaaggcttcctatcagtt
tatctggaatcatctgatgatgaggatgataacgaagaacaaaaaggaatgcttcctcct
ctaactataggtcaggaacttgccttggatgagatgaaagctcgtgaaggctttactcgt
catccggcccgttatacagaggcaagtttggtgaagaagctggaagaaatgggtattggt
agaccgtctacatatgcaccaaccatttcaacagtgcagaagagaaactacgtggtaaaa
gaattcagagaaggaaaggaaagagaatacgctgtagtaagactaaagaataaggaaatt
aagtctactaagcttactgagataaccggaactgagaaaaataagcttttcccaacaaat
acagccatggtagttactgacttcctggtagatcattttcctaatgtgactaactatagc
tttactgctgaagtagagaagctttttgatgaaatagcacatggaaagaaggagtgggat
aaaatgatagaagatttctattcggaattccattcaaaagttgagtctacggagagtata
gaaaggtcgtcagtgccttcttccagagagctgggtgtagatcctaaaactggtaaaaaa
gttattgccagactaggcaggtttggcccgatagctcagctgggtgatgaggaggatgaa
aagcctcaatatgccagcctaagacagggtcagtttatagaaagcatcactttagaagat
gctcttgaactatttaaactaccacgcgatcttggtgagtttgaagaaaaacctgttcag
gccaatgtaggaaggtttggtccatatgtaagacacaataataagttcgtttctatccct
aagggtgatgatgatccttataccatagaacttgatagagccatagagctgatcaaagct
aagcgtgaagctgatgctaataagttcataaaaacatttgaagagaatgaagatgttcag
gttcttaatggaaggttcggtccttacatcaaggtaggtaagaagaacgtgaaaattcca
aaagataaggatcctaaagaacttacactggcagaatgtttagaattagcagaaaaagca
cctgttaaaaaggccagaggtaagaaaaagtaa
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