Fulvivirga ligni: LVD16_12960
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Entry
LVD16_12960 CDS
T09288
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
flw
Fulvivirga ligni
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flw03032
]
LVD16_12960
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_12960
Enzymes [BR:
flw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LVD16_12960
DNA replication proteins [BR:
flw03032
]
Prokaryotic type
DNA Topoisomerases
LVD16_12960
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LVD16_12960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
UII24128
LinkDB
All DBs
Position
3032519..3033535
Genome browser
AA seq
338 aa
AA seq
DB search
MKRKSNCPHGIHYISDDCQGFTRKKRGKGFEYFDCDGDKITNTSAIERIEELVIPPMWKD
VWICQEENGHLQVTGYDEKGRKQYIYHTKWTEYQQKNKFSRLKEFGEKLPLIRKKIEEDI
NKKGWPKEKILALIVMMLDEYYIRIGNKRYEHENKTYGLTTLRRKHITEKDGHLVIGFKA
KSGKQREIDITDKKLIKLIKKTSELPGYEIFKYLDGEKKSHRLDSHDVNEYLVDITGEYF
TAKDFRTWGGTVLAIENIDEARKEIEENPRKKLETALVKKVSSVLGNTVAVCREYYIHPK
VMDVLMKNSVGHYTKKSLNGLKYKSELSKAEQLALKII
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggaagagcaactgtcctcacggcattcattatatatcagatgattgccagggc
tttacaaggaaaaagcggggcaaggggtttgagtattttgattgcgatggggataaaata
accaatacatcggctattgaaagaatagaagagctagttatacctcctatgtggaaagat
gtatggatctgccaggaagagaatggccacctgcaggttaccggctatgatgagaaaggt
agaaagcaatacatctatcacactaaatggaccgaatatcagcagaagaacaaattcagc
agattaaaggagtttggagaaaaattacctctgatcagaaagaagatagaagaggatatc
aataaaaaaggctggcctaaagagaaaattcttgcgctcatagtgatgatgctggatgaa
tactacatcagaatcgggaacaaaagatatgagcatgagaataaaacctacggccttacc
acactaagaagaaagcatatcacagagaaggatggccatctggttattggttttaaagct
aaaagtggcaagcagcgtgaaattgatatcacagataagaaattgataaaactaatcaaa
aagacttcagaactgcctggctatgaaatatttaaatatctagatggcgaaaagaaatcg
cacaggctagattctcatgatgtgaacgagtacctggtagatattaccggagaatacttt
accgcaaaagattttagaacctggggtggtaccgttctggccattgaaaatattgatgag
gccaggaaagaaattgaagagaatcctcgtaaaaagcttgaaacagctttggtaaagaag
gtctcgtcagttttgggtaatacagtggcagtatgccgtgaatactacattcatcccaaa
gtaatggatgtattgatgaaaaatagcgtaggacattatacaaaaaagagccttaatggt
ttaaaatataaaagtgaattatcaaaagcagaacagctggctttgaaaatcatatag
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