Fulvivirga ligni: LVD16_14515
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Entry
LVD16_14515 CDS
T09288
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
flw
Fulvivirga ligni
Pathway
flw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVD16_14515 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flw03019
]
LVD16_14515 (pnp)
03016 Transfer RNA biogenesis [BR:
flw03016
]
LVD16_14515 (pnp)
Enzymes [BR:
flw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LVD16_14515 (pnp)
Messenger RNA biogenesis [BR:
flw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LVD16_14515 (pnp)
Transfer RNA biogenesis [BR:
flw03016
]
Prokaryotic type
tRNA degradation factors
LVD16_14515 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
Peptidase_S24
KH_2
KH_Vigilin
DUF7436
MOEP19
Motif
Other DBs
NCBI-ProteinID:
UII19054
LinkDB
All DBs
Position
3401469..3403598
Genome browser
AA seq
709 aa
AA seq
DB search
MQLNVITKTINLPDGRSITIETGKLAKQADGSVVVRMGDTMLLATVVSKPEAGEGVDFLP
LSVDYQEKFASSGKIPGGFLKREGKLSDYEVLISRLVDRAIRPMFNDDYHADTQIAISLI
SGDPDALPDALAALAASSALMVSDIPFNGPISEVRVARVNGEFVVNPTMAQNAEGDMDLI
VAATMDNILMVEGEMKQVSEDEMLEAIKVAHEAIKEHCKVQLELQEEVGKTVKREYCHEV
NDADLEKRMHDELYEKVYEIAKTPNDKHARSEGFSKVYDEFIESLPEDAELDATMLSRYF
KSIKKEACRNLVLNETTRLDGRALNQVRPIWTEVNYLPATHGSAVFTRGETQSLTTVTLG
TKMDEQLIDGAMYEGSNKFMLHYNFPAFSTGEVRPNRGPGRREVGHGNLAWRALKEVLPA
ENTYTIRVVSDILESNGSSSMATVCAGSLALMDAGIQIEAPVSGIAMGMISDSKTGKFAI
LSDILGDEDHLGDMDFKVTGTEKGITATQMDIKVDGLSYEVLKQALEQARDGRLHILNEM
KKTISAPNADLKPNAPRSEVIMIDKDMIGAVIGPGGKVIQEIQKETGATIVIEEVDNKGK
VSVFAVNGDSMNEALKRIKAIVAQPEVGEVYDGKVKSIMPFGAFIEFMPGKDGLLHISEI
KWERVENMEGVMEVGEEVKVKLVDIDKKTGKFRLSRKVLLPKPEKKEAK
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaaacgtaattacaaaaacaattaatttacccgatgggagatccataactata
gagacaggaaaactcgcaaaacaagctgacgggtctgtggtagtaagaatgggtgacaca
atgttgctcgctactgttgtttctaaacctgaagctggtgaaggtgtagactttttacct
ttatcagttgactaccaggaaaaattcgcctcttctggtaaaatacctggaggtttcctt
aaaagagaaggaaagctttcagattacgaagtactcattagtagattggtagatagagct
atcagaccaatgtttaatgatgattaccatgcagatactcaaatagctatatctttaatc
tcaggagatcctgatgcgttgccagatgcattagctgcccttgcagcatcttctgcgctt
atggtgtctgatataccttttaacggacctatctctgaagtaagagtagctcgtgtaaat
ggtgagtttgtagttaaccctactatggctcaaaatgctgaaggtgacatggacctaatc
gtggccgctactatggataacatccttatggtagaaggtgagatgaagcaggtttctgaa
gatgagatgctagaggctattaaagtagctcatgaagctattaaagagcattgtaaagta
cagttagaacttcaggaagaagttggtaaaactgtaaaaagagaatattgtcatgaagtg
aatgatgctgatcttgaaaaaagaatgcatgatgagctttatgaaaaagtatatgaaata
gctaaaactcctaatgataagcatgcaagatcagaaggtttctctaaagtatacgatgag
tttattgaaagcttacctgaagatgctgagttagatgctactatgttatctcgttacttt
aagtctattaagaaagaggcttgtcgtaacctggtactaaacgaaactacaagactagat
ggtagagctctaaatcaagtgagacctatctggactgaagtaaattaccttcctgctact
cacggttctgcagtattcaccagaggtgaaactcagtcgttaaccactgtaacgcttggt
accaaaatggacgagcagcttatagatggagctatgtacgaaggatcaaacaaattcatg
cttcactataacttccctgcattcagtacaggagaggtaagacctaacagaggtcctggt
cgtagagaagtaggacacggaaacttggcttggagagctttgaaagaagtacttcctgct
gagaatacttatactatcagagttgtttctgatatcttagaatcaaacggatcttcttca
atggctactgtatgtgctggttcattagcacttatggatgctggtattcaaatagaggct
cctgtttctggtatcgctatgggtatgatctctgatagcaagactggaaaattcgcaatc
ctttctgatatccttggagacgaagatcacttaggtgatatggacttcaaagtaactggt
actgaaaaaggtattacagctactcagatggatattaaagtagacggactttcttatgag
gttttgaagcaggcactagagcaagccagagatggaagacttcacattcttaatgaaatg
aagaaaaccatatctgctcctaatgcagaccttaagcctaatgctcctcgttctgaagtg
atcatgattgataaggatatgattggtgctgtaataggacctggtggtaaggttattcag
gaaatccagaaagaaactggtgctaccatcgttattgaagaagtagataacaaaggaaaa
gtaagtgtattcgcagtaaacggagattctatgaacgaagctcttaagcgaatcaaagct
attgtagctcaacctgaagtaggtgaggtttatgatggaaaagtaaaatctatcatgcca
ttcggtgctttcattgagttcatgcctggaaaagacggtttacttcacatctccgagatc
aagtgggaaagagtagagaatatggaaggtgtaatggaagtaggcgaagaagttaaggtc
aaacttgttgacattgacaagaaaacgggtaaatttagactatcaagaaaggttctattg
ccaaaaccggagaaaaaagaggctaaataa
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