Fulvivirga ligni: LVD16_15265
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Entry
LVD16_15265 CDS
T09288
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
flw
Fulvivirga ligni
Pathway
flw03030
DNA replication
flw03430
Mismatch repair
flw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVD16_15265 (holA)
03430 Mismatch repair
LVD16_15265 (holA)
03440 Homologous recombination
LVD16_15265 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flw03032
]
LVD16_15265 (holA)
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_15265 (holA)
Enzymes [BR:
flw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LVD16_15265 (holA)
DNA replication proteins [BR:
flw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LVD16_15265 (holA)
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LVD16_15265 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
UII19204
LinkDB
All DBs
Position
3570086..3571108
Genome browser
AA seq
340 aa
AA seq
DB search
MALTPESILSDLKNKKFSPVYFFQGEETYYIDMLTDYIEDNVLNETEKGFNQVVLYGRDV
QMNEVLTNARRFPMMSERQVVIVKEAQNISDINKESGQKLLIDYLKNPVGSTVLVFAHKN
KSLDKRKSLGKLIDKHAVALTTKKLYDNQVPSWIDGYLKAKGFKATTKAVQMLADSIGND
LERLANEVDKILINYKEKIDIDEAIVQKYVGISKDYNVFELQKALIAKDVIKANQIINYF
DANEKKNPIIPIIAVLFSFYSKLLMVVGSKDRSERGLASALKVNPYFVKDYLVAARNYSP
VQIINNIHYIKEADLKSKGINNASATDGQLLKELVYKLLH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaactccagaaagcattctgtctgatcttaagaataaaaaattttcgcccgtg
tacttttttcagggagaagagacttattatatagatatgctcaccgattatattgaggac
aatgtgctcaatgaaaccgaaaaaggttttaatcaggtggtcctgtatggaagagatgtg
cagatgaatgaggtccttactaatgcgcgcagatttcctatgatgtctgaacgtcaggtg
gttattgtgaaagaggctcagaacatctcagatatcaataaagaatctggacaaaagctg
ttgatcgattatttaaaaaatccggtaggttctactgttcttgtttttgcccataaaaat
aagtcattagacaagagaaaaagccttggaaagcttatagataagcatgcggtagcttta
actactaaaaagctgtacgataatcaggtgccaagttggatagatggctaccttaaagct
aaaggctttaaagccaccactaaggcagtgcagatgttggcagattccattggcaatgat
ttggaaagattggccaatgaggtggacaaaattctcattaactacaaggagaaaattgat
atagacgaagccatagttcagaaatatgtgggaattagtaaagactacaatgtatttgag
ctccaaaaggcactaattgccaaggatgtaattaaagcgaatcaaatcattaattacttc
gacgccaacgagaagaaaaaccccattataccaatcattgctgtcttgtttagtttctac
agcaagctactaatggtggtaggttctaaagatcgatctgaaagaggccttgcttccgca
cttaaagtaaacccgtactttgtgaaagattatctggtggctgcaagaaattactcacca
gtgcagatcatcaataatattcattatatcaaagaagctgacttgaaatctaaaggaata
aacaatgcatcagccacagacggtcagcttttaaaagaattggtttacaaactattacat
taa
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