Fulvivirga ligni: LVD16_16465
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Entry
LVD16_16465 CDS
T09288
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
flw
Fulvivirga ligni
Pathway
flw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVD16_16465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flw03019
]
LVD16_16465
Enzymes [BR:
flw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVD16_16465
Messenger RNA biogenesis [BR:
flw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVD16_16465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
UTP25_NTPase-like
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UII19434
LinkDB
All DBs
Position
complement(3870754..3872091)
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AA seq
445 aa
AA seq
DB search
MNFDEFKISNQLRNAIDELGFTAATEIQEKAFPVIASGTDVVGISQTGTGKTLAYLLPLL
QDLKFSKSPNPRVLILVPTRELVTQVVAAIESLTTYVTVRTLGIFGESNIRLQKEALAEG
QDLIVATPGRLYDLILARAVTMKETKKLVIDEVDVMLDMGFRTQLNHLFDLLPDKRQNIM
FSATMTEEVNELIHDFFHTPEQITVAVSGTPLDNITQASYKVLNFNTKINLLADLLRDKA
TYNKVLVFVSSKRLADYLLQKLEESLGSGIGIIHSNKTQNHRLRTVEEFENGSIRILIAT
DVIARGLDFQKVSHVINMDTPKYPENYMHRIGRTGRASEKGESILLYSDPEEDAKKEIEA
LMNLTINELEFPEETEINHELIPEERPKEKQGSYGKQPKLKPKVKDAEKKAKNMKVNSGS
SYKAKIAAKYKKPKTRGDKRQNKRK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatgaatttaagatcagcaatcaactgcgtaatgcaattgatgaattaggt
ttcaccgcagccacggaaatacaggaaaaagcctttccggtaattgcttcaggtactgat
gtagtgggtatatcccagaccggtacaggtaaaaccctggcttatttactaccattattg
caagatctaaaattctcaaaaagtcccaatccgcgtgtgcttatattggttcctaccaga
gaattagtaactcaggtggtggccgctatcgaaagtctaacaacttatgttacggttaga
acgctgggcatatttggagaatccaacatcaggctgcaaaaagaggctttagcagaaggg
caggatctcattgtagcgactccaggccgattatatgacctcatattggcaagagccgta
accatgaaggaaactaaaaagctggttattgatgaagtagatgtaatgcttgatatgggt
ttcagaacgcagctcaaccatctgtttgatctactgccagataaaaggcaaaacatcatg
ttttcagccacaatgactgaagaagtgaatgagctgatccatgatttcttccatactcca
gagcagataacggtggcagtaagcggaactcctttggacaatatcactcaggccagttat
aaggtactgaatttcaatactaaaattaatctgttagcagatttactgagagataaggct
acttataacaaagtcttagtattcgtctccagcaagcgcttagctgactacttactacaa
aagctggaagaatctcttggttcaggaattggtataattcattcaaataaaactcaaaat
cacaggttaagaactgttgaagaatttgagaacggatcaatccgcatcttgatcgccact
gatgtcatcgctcgtggtctggattttcaaaaggtgagccatgttattaatatggatacc
ccgaaatatcctgaaaactacatgcaccgaattggcagaacgggtagagcctctgaaaaa
ggagagtccattcttttgtattccgatccggaagaggacgcaaaaaaggaaatagaagcc
ctaatgaatctcactattaatgagctggaattccccgaagaaacagagatcaatcacgaa
ctcatccccgaagagcgaccaaaagaaaaacaaggcagctacggcaagcaacccaagcta
aaaccaaaagtgaaagacgccgagaagaaagccaaaaacatgaaagtcaactccggcagc
tcctacaaagcgaagatcgcagccaaatataaaaagcctaagaccagaggagataagaga
cagaataagaggaaatga
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