Fulvivirga ligni: LVD16_16715
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Entry
LVD16_16715 CDS
T09288
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flw
Fulvivirga ligni
Pathway
flw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVD16_16715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flw03019
]
LVD16_16715
03009 Ribosome biogenesis [BR:
flw03009
]
LVD16_16715
Enzymes [BR:
flw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LVD16_16715
Messenger RNA biogenesis [BR:
flw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LVD16_16715
Ribosome biogenesis [BR:
flw03009
]
Prokaryotic type
rRNA helicases
LVD16_16715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UII19484
LinkDB
All DBs
Position
complement(3936775..3938535)
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AA seq
586 aa
AA seq
DB search
MTNFSNLGLSDPLLKVLNELNFESPTKIQQQAIPVLINEGDSDFIGLAQTGTGKTAAFGL
PLLESIDPARKETQAVVLAPTRELGQQIGQQLESFSKYMDGVNIVTVYGGASIQVQIKAL
KKKPQIVIATPGRLLDLLNRKAVDLASVRFVVLDEADEMLNMGFREDLDHILSYTEGEKA
TWLFSATMAKEIKNIVKKYMNNPNEVKIDSGNVVNTNIDHQYFAVKAKDKPNLLQYIIQL
EPDMRGIIFCRTKRDTQSLTEQLQKRGLPVDALHGDLSQAQRDQVMKRFKNHTLEFLLCT
DVAARGIDVNDITHVIHYALPDDTEYYTHRSGRTGRAGKTGISLALVSSSDQRKLNFMQK
KLNLKFSEYTLPSPVAVENQKLITWAKRVMDVKTDVQAIKDHQSDIYELFNELSKEELID
KLLTIELDKFGIRDQGFDVADLDNVSLDSRSSRESEKSPYKKFFINIGKMDGFNKSDLIE
FVMTYSEIKKKSIGEITIEERRSYFEVLKEDLSQMDGAFTDLMLDGREIRVNAANRGGGG
GGNGGGKRSDRNDGRSFKRNDRKRSSGRGGGGGGGKGRRSGGGRRR
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttccaatctcggactttcagatcctttgctgaaagttcttaatgaactg
aattttgaatcacccaccaaaattcagcaacaagcaattccggtacttattaatgagggg
gatagtgattttataggcttagcacaaactggtacaggaaaaaccgctgcttttggcctt
ccattattggaatcaatagatcctgcgcgtaaagaaacacaagctgtagtacttgcacca
accagagaacttggtcagcaaatagggcagcagttggaatctttttctaaatacatggat
ggtgtaaacatcgtaacggtttacggtggagcctctattcaggttcagattaaggcttta
aagaagaagcctcaaatagttatagccacgcctggtaggttgttagatctacttaacaga
aaggcagtagacttagcgagtgttcgttttgtagtgttagatgaggcagatgaaatgctt
aacatgggtttcagagaagaccttgatcacatcttatcatatacagaaggagagaaggcc
acctggttattctctgctactatggctaaagaaattaagaacattgtaaagaaatacatg
aataaccctaatgaggttaagattgattctggcaatgttgtaaatacaaatattgatcac
cagtattttgcggttaaagcgaaagacaaaccgaatttactgcaatacatcattcagctt
gagcctgacatgagaggtatcatcttttgcagaaccaaaagagatacacaaagtcttaca
gagcaacttcaaaaaagaggtttacctgtagatgcacttcatggtgacttatctcaggcc
cagagagatcaggtaatgaaaaggtttaaaaaccacaccctggagtttcttctatgtact
gatgtagccgctagaggtattgatgtaaatgacattacccatgttattcactatgcactg
cctgatgatactgaatactacactcaccgtagtggtagaacaggtagagctggaaaaact
ggtatctcattggctttggtaagctcctcagatcagcgaaagctgaactttatgcaaaag
aagcttaacctaaagttctctgaatatacattaccaagcccagtagctgttgagaatcaa
aaattgattacatgggctaagcgtgtaatggatgtaaaaactgatgttcaagctataaaa
gaccatcagtcagatatttacgagctttttaacgaactttctaaagaagaacttatagat
aaactccttactatagagctggataagtttggtattagagatcaaggttttgatgtagcg
gacttagataatgtaagccttgatagcagatcaagccgtgagtctgagaaaagtccttat
aagaaattcttcatcaacattggtaagatggatggctttaataagtctgatcttattgag
tttgtgatgacatattctgaaattaagaaaaagtctatcggtgaaataactatagaagag
agaagatcttattttgaagtattgaaagaggacttatctcaaatggatggtgcctttact
gacttaatgctagacggcagagagatcagagtgaacgcagcgaaccgcggtggcggcggt
ggtggcaatggcggcggtaaacgcagcgatagaaatgacggcagatcgttcaagagaaat
gatagaaaacgttcatccggcagaggcggcggaggaggcggcggaaaaggtcgcagaagc
ggcggcggaagaagaagataa
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