Fulvivirga ligni: LVD16_19875
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Entry
LVD16_19875 CDS
T09288
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
flw
Fulvivirga ligni
Pathway
flw03030
DNA replication
flw03430
Mismatch repair
flw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVD16_19875 (dnaE)
03430 Mismatch repair
LVD16_19875 (dnaE)
03440 Homologous recombination
LVD16_19875 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flw03032
]
LVD16_19875 (dnaE)
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_19875 (dnaE)
Enzymes [BR:
flw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LVD16_19875 (dnaE)
DNA replication proteins [BR:
flw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LVD16_19875 (dnaE)
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LVD16_19875 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
T2SSK
OB_MCM10
HHH_3
DNApol_Exo
Motif
Other DBs
NCBI-ProteinID:
UII20108
LinkDB
All DBs
Position
4772376..4776623
Genome browser
AA seq
1415 aa
AA seq
DB search
MYIVFDTETTGLPHSYSAPITDLDNWPRLVQLAWQLHDEKGKLLSNHNYIVKPEGFTIPY
NSEKVHGISTKRAMEEGHDLKEVLDIFSKDLDRATIVVGHNIEFDNKIVGTEYVRKDQLP
KGEELQEKEKIDTSEVSKEFCQLQGGIGGRLKAPKLIELHEKLFGVGFGDAHDAAYDVDA
TAKCFFGLITEKVVPTINDIPVEEVIYEAPKLDEANFSKSEKKKTVTYGGDKAAAQKIDK
PFVHMHVHTQFSVLQAVPDIKGLVAKAKEYNMPAVALTDLGNMFGAFKFVREAIANEIKP
IVGCEFYVAEERTKLKFTKDNPDKRFNQVLIAKNKKGYHNLAKLSSLAYMEGLYGIYPRI
DKDLIKEYSEDVIALTGGLQCEVPNLILNVGEHQAEEAFQWYLEVFKEDFYVELLRHGER
AGQGLEEENRVNEVLLDFARKYHVKVIAANDVYYINQKDSEAHDVLLCVKEGEMKSTPIG
RGRGFRFGFPNDQFYFKSQEEMKVIFSDMPEAIENLSELIDKIETFKLDRDVLLPAFDIP
EQFKHPDDEKDGGKRGENAFLRHLTYEGANKRYEEITDEIRERLDFELQTIENTGYPGYF
LIVQDFTSKAREIGVSVGPGRGSAAGSAVAYCIGITNVDPIAYDLLFERFLNPDRVSLPD
IDIDFDDEGRESVIQYVIDKYGRNQVAQIITYGTMAAKSSIRDAARVMELSLAEANDLAK
LIPEKPGTSLDKAFKEVKELEQMRHGKDLKAKVLNQAKILEGSVRSTGTHACGVIITPDD
LTKFIPVSTAKDSPMLITQFDNSVVENAGMLKMDFLGLKTLTIIKSAIANVKKRHGIEID
IDTISLEDTKTYELYQRGETNGTFQFESPGMQKHLRALKPDKFEDLIAMNALYRPGPMEY
IPNFIARKHGDEEITYDIDDMSEYLAETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAM
GKKIFALLEKLKPKFVEGGKEKGHDPKILEKVWKDWEAFAAYAFNKSHSTCYSLVAYQTA
YLKAHYPAEYMAAVLTHNQSNIEKVTFFMEECRNQSIKVLGPHINQSAVNFAVNEDGEIR
FGLGAIKGSGEAAVESIIQEREANGPFKDIFDFAERINLRTVNKKTFECLAMSGAFDCFE
EFHRRQYLQAPEGDQTLIEKVIKYANKMQMEAESSQASLFGGDSGVDTPKPKIPNMEPFG
EIEKLNIEKDVVGLYISGHPLDDFAFEIESFCNTELNQLNDLTQLTGKEVRIAGVVSSFA
HRTTKGGKPFGTLTMEDYNGNFTFFLFGDDYIKFKEYLMQGWFLYIQGSATERRWGDKSL
EFKIRTIELLNDLRDKKTKGVMINVKLEEITEEIVLKLESICEQYRGECTFHLNLVDTHE
NIGVELMSRKYKVNPSNEMMKEIKDIPELQCRVMV
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgtatatagtttttgataccgaaaccacaggtttaccgcatagttatagtgctcccatc
actgatctggataactggcccaggctggtgcagctcgcttggcagctacatgatgagaaa
ggtaagctcctgtctaatcataactatattgtaaagccggaagggttcaccattccctat
aactctgaaaaagttcatggtatttctaccaaaagagctatggaagagggccatgaccta
aaagaggttctggatattttctctaaagatctcgatagagctaccatagttgtcggtcat
aatattgagttcgataataaaattgtaggtactgagtatgttcgaaaagatcagttacct
aaaggagaagaacttcaggaaaaggaaaagatagatacttctgaagtatctaaagagttt
tgtcagctgcaaggtggtataggtggtaggctcaaggctccaaaactaatagagctacac
gaaaagctctttggtgttggttttggcgatgctcacgatgctgcatatgacgttgacgct
accgcaaaatgttttttcggcctaatcaccgagaaagtagtacctaccatcaatgacatt
ccggtagaagaagtaatctacgaagcgccgaagctggacgaagccaacttttctaaatca
gaaaagaaaaaaaccgttacctatggtggtgataaagcggctgcccagaaaatagataag
ccgtttgtacacatgcacgtgcatacgcagttctctgtactacaggccgttcccgacatt
aaaggtctggtagccaaggcgaaagaatataatatgccggctgtagcactcaccgatttg
ggtaacatgttcggtgccttcaagtttgtgcgtgaggctatagccaatgaaataaagccg
attgttggttgtgaattttatgtagctgaagaaagaaccaaactaaaatttactaaagac
aatcccgataaaagatttaatcaggtactcattgccaaaaacaagaagggataccataac
ctggccaaactaagctccttagcttatatggaaggtctttatggtatttatccgcgtatt
gataaagacctgatcaaggaatattctgaagatgtaatcgccctcaccggtgggttacaa
tgtgaagtacctaacctgattcttaacgtaggtgagcaccaggctgaggaagcatttcag
tggtacctggaagtatttaaagaagacttctacgtagagctactccgtcatggtgagcgg
gcaggccaggggctggaagaagagaaccgtgttaatgaagtactattggacttcgctaga
aaataccatgtaaaggtaatagcggccaatgatgtatactacatcaaccagaaagactct
gaagcacatgacgtactgctttgtgtaaaagaaggtgaaatgaagtccaccccaattggg
cgaggacgaggcttccgatttggtttcccaaatgaccagttctacttcaaatctcaggaa
gagatgaaggtgattttcagtgacatgccggaagccattgaaaacctttctgagctcatc
gataaaattgaaaccttcaaactagacagagatgtacttctcccggctttcgacatacca
gagcagttcaagcatcctgatgatgaaaaagatggtggtaaaagaggtgaaaatgccttt
ttaagacatcttacttacgaaggagcgaacaaaagatatgaagagatcaccgatgaaatt
cgcgagcgtctagactttgagctgcagactattgaaaacaccggttatcctggttatttc
cttattgtacaggattttaccagtaaggcccgggagattggcgtttcagtaggtcccgga
aggggttcagcggctggttcggccgtagcctactgtatcggaattaccaatgtcgatcct
attgcatacgacctactttttgagagattcctgaatccagacagggtatcacttcccgat
attgatattgactttgatgatgaaggtcgtgaaagcgtcattcaatacgtaattgataaa
tatggtcgaaatcaggtagcccagatcattacatatggtaccatggcggccaaatcatcc
attagagatgctgcccgtgtaatggagctttctttggctgaagccaacgatctggcgaaa
ttgatacctgaaaagcccggaacatcgctcgacaaagcctttaaagaagtaaaggagttg
gaacagatgcgccatggaaaagacctgaaagccaaggtattgaaccaggccaaaattctg
gaaggatcggtaagaagtactggtactcatgcctgtggtgtgatcattacgcctgatgac
cttactaagttcatcccggtatctacggctaaggactctcctatgcttatcacacagttt
gataacagtgtagtagagaatgcaggtatgttgaagatggacttcttgggtctaaaaaca
cttaccattataaaatcggccattgccaatgttaaaaagcgccatggcatagagatagat
attgacaccatctccctggaagacaccaagacttatgagctctaccagcgaggagaaacc
aacggtacattccagtttgagtctccgggtatgcagaagcaccttcgcgccctgaagccc
gataaatttgaagaccttatagccatgaacgccctgtatcgtccggggccgatggaatat
attccaaactttatcgccagaaagcatggtgatgaagagattacttatgacatagacgat
atgtcagaatatctggctgaaacctacggaattacggtatatcaggagcaagtaatgctt
ctgagccagaagctggctggcttctccaaaggtgatgcggacgttctgcgtaaggccatg
ggtaagaaaatctttgccttactggaaaagctgaaacctaagtttgtagaaggaggtaaa
gaaaagggccacgatcctaaaatacttgaaaaagtatggaaagactgggaagcctttgcc
gcttacgcctttaacaaatcacactctacttgttactcccttgtagcctatcaaacggct
tacctgaaagcccattacccggcagaatatatggcagccgtgcttactcataaccagagt
aacatagaaaaggtaacgttcttcatggaagaatgtagaaatcaaagtatcaaggtatta
ggtccacatatcaatcagtcagcggtaaactttgcggtgaacgaagatggcgaaattcgc
tttggactaggtgccatcaaaggtagtggtgaagcagcagtagaatccattattcaggaa
agagaagccaatggcccttttaaagatatttttgattttgctgaacgcatcaacctgaga
acagtaaacaagaaaaccttcgaatgcctagccatgtccggtgctttcgactgttttgaa
gagttccacagacgccaatacttgcaagctcctgaaggcgaccaaacgctgattgagaag
gttattaagtatgccaacaaaatgcaaatggaggccgagagctctcaggccagcctattt
ggtggcgattccggtgtggatactcctaagccgaagattcctaacatggagcctttcggc
gaaatagagaaattgaacatcgaaaaagatgtggtaggactctatatctccggccacccg
ttagatgattttgcttttgaaatagaaagcttctgcaacacagaactgaaccagctcaat
gacttgacacaactcactggaaaagaagtgaggatagctggtgtggtatcgtcttttgca
catagaacaactaaaggtggtaaaccgtttggtacattaaccatggaggactacaacggt
aatttcaccttcttcctctttggtgatgattacatcaagttcaaggagtatttgatgcaa
ggttggttcttatacattcaaggtagcgctacagagcgtcgctggggtgataagagtctg
gaattcaagataagaactatagaattattaaatgatcttcgtgataaaaagactaaaggc
gtaatgattaacgttaagctggaagagatcacagaagagatcgtattaaaattagagagt
atttgtgagcaatatcggggagaatgcaccttccatttaaacctggtagacactcatgaa
aatatcggagttgagcttatgtctaggaaatacaaggtaaatcctagtaatgaaatgatg
aaggagataaaggacataccagagcttcaatgcagagttatggtataa
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