Fulvivirga ligni: LVD16_25930
Help
Entry
LVD16_25930 CDS
T09288
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
flw
Fulvivirga ligni
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
flw03016
]
LVD16_25930
Enzymes [BR:
flw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LVD16_25930
Transfer RNA biogenesis [BR:
flw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LVD16_25930
Prokaryotic type
tRNA splicing ligases
LVD16_25930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UII21276
LinkDB
All DBs
Position
complement(6109066..6110487)
Genome browser
AA seq
473 aa
AA seq
DB search
MATTKLTGKELRQLGYPEGRAIGEAIKAMENSYKGKSKKFKLELLTRVVQNPALYLKHEN
LAPVAKSLIIKTEYNETLELNKKRIPYQTYGAEGIEAGAVNQMEVAMKLPITHSGALMAD
AHQGYGLPIGGVLATRNAVIPYGVGVDIGCRMCMTLYDLPAVFEYKNLDNYKKMLNDNSR
FGNAIFKRPKGHDVIDRSEFSEINILKSLKDRAYSQLGSSGGGNHFVEFGVTEIVDVENE
YNLPKGKYLAVLSHSGSRGLGANIARHYTKLAMDKCKLPAEAKHLAWLDLDTEDGQEYWL
AMNLAGDYASACHHQVHERMATSLGEQPLAMIENHHNFAWKEKDAEGNEIIVHRKGATPA
GKGVMGIIPGSMTSPGFIVRGRGEHASINSASHGAGRVMSRTKAKAMLTRDEVRSYLKHA
GVHVIGSGLDEAPMAYKDIHQVMAAQVDLVDVVGTFQPKVVRMCGDDRFAEVD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacaaagttgacaggtaaagagctgagacagctcggatatcctgaaggtaga
gccattggagaagctataaaggctatggagaattcctacaaagggaaaagcaaaaagttt
aagcttgagcttttaaccagagtagtgcagaatccggcgctttacctaaaacatgaaaac
ttggccccagtggctaagagcttgattatcaagacagagtataatgaaacgctggagcta
aacaagaaaagaattccttaccaaacttatggtgctgaaggcattgaggctggtgctgta
aatcagatggaagtagccatgaagttaccgatcacgcattcaggggcgcttatggctgat
gcgcatcagggttatggattacccatcggtggtgtgctggccaccagaaatgctgtaatt
ccatatggtgtaggagtagatattggctgtagaatgtgcatgactctgtatgatttacca
gcagtatttgaatataaaaacctggataactataagaaaatgctgaatgataacagcagg
tttgggaatgctatattcaaaaggcctaaaggtcatgatgtaatcgatagaagtgagttt
tcagaaattaatatcctgaagtcgctaaaagacagggcatattcacagttaggctccagt
ggtggcggtaatcactttgtggagtttggtgtcactgaaattgtggatgtggaaaacgag
tataatctgccaaagggtaaatatttggctgtgttatctcactctgggtccagaggtctg
ggagctaatattgccaggcattacaccaagctggccatggataagtgcaaacttccggcg
gaagctaagcacctggcctggctggatctggatactgaagacggccaggaatattggttg
gctatgaatctggcaggtgattatgcatcggcatgtcatcaccaggttcatgagagaatg
gcaacctcccttggcgagcagccattggccatgattgaaaaccaccacaacttcgcctgg
aaggagaaagatgctgagggcaatgagattattgtccatagaaaaggtgctactcctgcc
ggtaaaggcgtgatgggaattattcctggctccatgacgtcgcctggttttatagtaaga
ggtagaggcgaacatgcttctattaactccgcctcacatggtgcaggtagagtaatgagt
agaactaaagccaaagccatgcttaccagagatgaagtgagaagctacttaaagcatgcc
ggtgtccatgttattggctcaggcctggatgaggcgcctatggcatataaggatattcat
caggtgatggcggctcaagtggatttagtagatgtagtcggcacattccagcccaaagtg
gtgagaatgtgtggtgatgacaggtttgctgaagtagactaa
DBGET
integrated database retrieval system
