Fulvivirga ligni: LVD16_26625
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Entry
LVD16_26625 CDS
T09288
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
flw
Fulvivirga ligni
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
flw03009
]
LVD16_26625 (rlmD)
Enzymes [BR:
flw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LVD16_26625 (rlmD)
Ribosome biogenesis [BR:
flw03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LVD16_26625 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
PrmA
N6_N4_Mtase
TRM5-TYW2_MTfase
Methyltransf_11
Cons_hypoth95
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
UII21407
LinkDB
All DBs
Position
6272448..6273869
Genome browser
AA seq
473 aa
AA seq
DB search
MKLKNKILKDLTIEGIAAEGKCITRYEGQVIFVTDVAPGDVADIKVIRKKKTFLEAIPVK
IHQYSDLRKDPFCEHFGTCGGCKWQHINYETQLDYKHQQVIDSLERIAKVPMPEPKRILG
SEETRYYRNKLEFTFSNKRWLTREEIDQEDDLDRDALGFHIPKRFDKILDINHCYLQPDP
SNNIRLTVRQIAKENNIPFFDLITQEGYLRNLIIRNTITGEVMVILQVAGDNEQYLTTIL
DGLKDKFPQITSLNYVINTKRNETFNDLEVVNYNGKAYITEEMRLPDNADKSVSFQIGPK
SFFQTNAKQAEVLYKKAWEMAQLTGNELVYDLYTGTGTIANYVAGNAKEVIGIEYVEAAI
EDAKVNSEINGITNTKFFAGDMKDLLTDDFVNEHGRPDVIITDPPRAGMHQDVCEVILNT
RPQRIVYVSCNPATQARDIAILDKYYKITDVQPVDMFPHTHHVENIVALELKD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaaaaaataaaattttaaaagacctaaccatagaaggtatcgcagctgaagga
aaatgcataacccgctatgaaggccaagtaatatttgttaccgatgtagctcctggcgat
gttgccgacatcaaggtgatcagaaagaagaaaaccttcctggaggctattccagtgaag
atccatcaatattctgacctaaggaaagatcctttttgcgagcattttggcacctgtggt
ggttgtaagtggcagcatatcaattacgaaactcagctagattacaagcatcagcaagtg
attgatagcctggaaagaattgccaaggttcctatgccagagccaaagagaatattagga
tctgaggaaacgcgctattatcgaaataagctggagttcactttttccaacaaaaggtgg
cttaccagagaagaaatagatcaggaagatgaccttgatagagatgctttaggttttcac
attccgaagagattcgataaaattctggatatcaaccattgttacttgcagccagatcct
tctaacaatatacgcctgactgtaagacaaatagctaaagaaaataacattccgtttttt
gacctaatcacacaagaaggttatttaagaaatctaatcatcagaaataccataactggt
gaagtaatggtgattttacaagtagccggagataatgagcaataccttactaccatactt
gacgggctgaaagacaagtttccacagatcacttcattaaactatgtgatcaacaccaag
agaaacgaaacttttaatgacctggaggtggtaaattataacggcaaggcatacatcact
gaagaaatgcgacttcctgacaatgctgataaatctgtaagttttcaaattgggcctaaa
tcctttttccaaaccaacgccaagcaagcagaagttttatataaaaaagcctgggaaatg
gctcaactcactggcaacgaactggtttacgatctttacacaggtactggaaccatcgcc
aactacgtagctggtaatgccaaagaagtgataggtattgaatatgtagaggctgccata
gaagatgcaaaggtgaactctgagatcaatggcattactaatactaagttctttgcaggt
gacatgaaagacctgctcacggatgactttgtgaatgaacacggaagacctgatgtaatc
attactgatccgccaagagcgggaatgcaccaggatgtttgtgaggtaattttgaacacc
agaccacaaaggatcgtatatgtaagctgtaaccctgctacacaagcccgagatattgcc
attttggataagtattataagatcactgatgtgcagccagttgatatgtttccacatact
catcatgtggagaatattgtggctttggagctaaaagattaa
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