Fulvivirga ligni: LVD16_26765
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Entry
LVD16_26765 CDS
T09288
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
flw
Fulvivirga ligni
Pathway
flw03030
DNA replication
flw03430
Mismatch repair
flw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVD16_26765 (dnaE)
03430 Mismatch repair
LVD16_26765 (dnaE)
03440 Homologous recombination
LVD16_26765 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
flw03032
]
LVD16_26765 (dnaE)
03400 DNA repair and recombination proteins [BR:
flw03400
]
LVD16_26765 (dnaE)
Enzymes [BR:
flw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LVD16_26765 (dnaE)
DNA replication proteins [BR:
flw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LVD16_26765 (dnaE)
DNA repair and recombination proteins [BR:
flw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LVD16_26765 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
DUF1776
Motif
Other DBs
NCBI-ProteinID:
UII21434
LinkDB
All DBs
Position
6304160..6307144
Genome browser
AA seq
994 aa
AA seq
DB search
MSCEELLEDAGSKGMDAVVLTDINSTAACLNFVRLAPKYNIKPVLGIDFRNGVEQLFIGI
AKNNQGYYELNRYLSQFLHSGESIPEKAPVFQHAFVIYPFSEYKGQRLRKNEYLGVTPQY
INRLRFSSYYPALKDKLVILQTATFRNKKDFNAHRLLRAIYNNTLLSKLPKSEEGDPNHQ
MLSKDQLIETYSPHPEIFSNTLKLISQCSIYFEFGDEQDHKNQKNYTHSEYEDYKKLCKL
CYKGLSYRYKEINDAIKKRLKTELQVIREKQFIAYFLINWDIVTYARRKGYFYVGRGSGA
NSIIAYLLRITDVDPIDLDLYFERFINLYRKNPPDFDIDFSWTDREDITSYIFKRFKNVA
LLATYSTFQLRAVIRELGKVFGLPAHEIEKIAEGQPRQDYYSHLVLKYGHLIQGFPSHLS
IHAGGILISQKHIHYFSATDLPPKGYPTTHFDMVIAEDVGLYKFDILSQRGLGKIKDTLA
IVKENKPQDPAIDIHDLDRFKKDGLVKSLLKQGKAIGCFYVESPAMRMLLKKLEADDYLG
LVAASSIIRPGVAKSGMMREYILRFRHPERRKEAHPILMNIMPETFGVMVYQEDVIKVAH
YYAGLTLAEADVLRRGMSGKFRSRDEFQKAQDKYFTNCKAKGYSHAESAEIWRQIESFAG
YAFSKGHSASYAVESYQSLFLKAYYPMEYMVATINNFGGFYRTELYVHEARMHGAKIFPP
CANMSDALTKIYGNRIYLGLGFIKDLDHRTIEQLLIARGKYGDYLSLTDFVKKVPVSLDQ
ASLLIKAGVFQFTGKNKKELLWEAHFLLANTKKASNMPKLFEVDIKRLTIPNISVPHPLE
NAFDEMELLGFPLCNPFDLLRNRPDYHFRTIDFPNNLHQTITIYGYLVAIKNTSTTKKAR
MNFGTFLDVEGHFIDTVHFPQSAAKWPFRGRGIYAITGKVVEEFGFYSLEVTEMTKEPFI
DDPRYSEDNGKLGVKRKTMKMTFDSTSSVSYGRG
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtgaggagttgctggaggacgctggtagtaagggtatggatgcggtggtactt
actgatattaactctacggcggcttgccttaattttgtgcgtctggcgccgaaatataat
attaagccagtattgggaattgatttcaggaatggtgtagagcagctatttatcggcatt
gcgaagaacaaccagggctactatgagctgaatcgctacctttctcaatttttacattct
ggtgaaagtattccagaaaaggctccagtatttcaacatgcttttgttatttaccctttt
tcagaatataaaggacagcgtcttcgaaaaaacgaatacctgggcgtcactcctcaatat
ataaacaggcttaggttttcatcatattatccagccctgaaagacaagctggttatttta
caaactgccacgtttagaaataaaaaagacttcaatgcccacaggctgttacgggccatt
tacaataacaccctgcttagcaagctacccaaatcagaggaaggcgatccaaaccaccag
atgctttcaaaagatcagctcattgagacctattcgcctcatcctgaaatctttagcaac
accctaaaactgattagtcagtgtagtatttactttgaatttggcgacgagcaagatcac
aagaaccagaaaaactatactcactcagaatatgaagattataaaaagctatgtaagcta
tgttataaagggttgagctatagatataaagagatcaacgatgctatcaaaaaaaggctt
aaaacagaacttcaggtcattagagagaagcaatttattgcctattttttgattaactgg
gacatagtaacttacgccagaagaaaggggtacttttatgtaggtcgcggcagtggtgcc
aacagtataatcgcttaccttctcagaattactgatgtagaccccatagatttggatctg
tattttgaaaggttcatcaatctttacaggaaaaatccgcctgattttgatattgacttc
tcatggactgaccgtgaagatattacttcctacattttcaagcggtttaagaatgtggca
ctactggctacatacagcacttttcaactaagggcagtgatcagggagctggggaaagta
tttggtttaccggcccatgaaattgagaaaattgccgaaggtcaacccaggcaagactat
tattctcatttagtattaaaatatggtcatcttattcagggtttccctagtcatttaagc
attcatgctggtggtatacttatatctcaaaagcatatccattatttttcagccactgac
ctgccgccaaaaggctatcctaccactcattttgatatggtgatcgccgaagatgtggga
ctctataagtttgacatattaagtcagagaggcttagggaaaataaaagatacgctggcc
atagtaaaagaaaataagcctcaggatccagctattgacatccatgacctggacagattc
aagaaagatggactggtaaaatcactactgaagcaaggtaaagctattggctgtttttat
gtggagtcacctgctatgcgcatgcttttgaaaaaactagaagctgatgattatcttggc
ctggtagctgccagctctattattcgacctggagtagccaaatcagggatgatgcgtgag
tatatccttaggtttaggcatccggaaagaagaaaagaggcacatcctatacttatgaat
attatgccggagacctttggagtaatggtatatcaggaagatgtgattaaagtggcgcat
tattatgcaggtcttactttagcagaagctgatgtactgcgccgaggcatgtctggcaag
ttccgctcaagagatgagtttcaaaaagcacaggataaatacttcactaactgcaaagcc
aaaggctactctcatgcagaaagcgctgaaatatggaggcaaatagaaagctttgccggc
tacgccttctctaaaggacactcggcctcttatgccgtagaaagctaccaaagcttgttt
ttaaaagcctattatccaatggaatatatggtggccaccatcaataacttcggcggattt
tacagaactgagctctatgtacatgaagcgcgcatgcatggagccaaaatatttcctccc
tgcgctaatatgagcgatgccctcacaaaaatatatggcaatagaatatatctgggactt
gggttcattaaagacctggatcacagaactatagagcagctgttaatagccagaggcaag
tatggtgattatctttctttaactgattttgtgaagaaagtgcctgtttcattggatcag
gcttccctccttataaaagctggggtatttcagtttacaggaaaaaacaaaaaagaacta
ctatgggaagctcacttccttttagccaatacaaaaaaggcttcaaatatgcccaagcta
tttgaagtagatattaaacgattgaccatacctaacatttcagttccccatccattagaa
aatgcttttgatgaaatggagcttctaggttttcctctttgcaatccgtttgacttactt
agaaacaggccggattaccatttcagaaccatagactttccgaacaaccttcatcaaacc
attactatttatggctatctggtagcgattaagaatactagcaccacaaaaaaagccaga
atgaatttcgggacattcctggatgtagaggggcattttatagataccgtacattttccc
cagtcggcagcaaagtggccatttagagggcgcggtatttatgctattactggcaaagtg
gtagaagaatttggattctacagcctggaagtaactgaaatgaccaaagagccatttata
gatgacccacggtatagtgaggataacgggaaacttggcgtaaagcgaaaaactatgaag
atgacctttgattctacttcttcagtgagttatggtcggggttag
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