Flavobacterium sp. YJ01: P0R33_23445
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Entry
P0R33_23445 CDS
T11516
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fly Flavobacterium sp. YJ01
Pathway
fly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0R33_23445 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fly03019
]
P0R33_23445 (recQ)
03400 DNA repair and recombination proteins [BR:
fly03400
]
P0R33_23445 (recQ)
Enzymes [BR:
fly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0R33_23445 (recQ)
Messenger RNA biogenesis [BR:
fly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P0R33_23445 (recQ)
DNA repair and recombination proteins [BR:
fly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
P0R33_23445 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
HTH_40
RQC
HRDC
RecQ_Zn_bind
GerE
Helicase_Sgs1
zf-CXXC
HTH_5
Sigma70_r4_2
HEM4
DUF2802
DUF6115
Zn_ribbon_21
Motif
Other DBs
NCBI-ProteinID:
WET02707
LinkDB
All DBs
Position
complement(5469958..5472072)
Genome browser
AA seq
704 aa
AA seq
DB search
MTSEILHATLKENFGFEKFRPNQETIINTILSGQDTLAIMPTGGGKSICFQLPALVLPGI
TIVISPLIALMKDQVDSLKTNGISACFINSSQSSQEQQYYIDNLKSNTFKLVYIAPESLS
YLDMAFNELNISLIAIDEAHCISSWGHDFRPAYTNLGYLKNRFPSTPVLALTATADKATR
TDIVKQLNLKKPKTFIASFDRKNLSLEVRPALDRVKQIIDFIEDKPNESGIIYCLSRKTT
EELAEKLKKNGISAKAYHAGLDNETRAKTQDHFINDDCQVVCATIAFGMGIDKSNVRWVI
HYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQLQKFASEGLNSDIQLAKLDRMK
QYADAVSCRRKILLSYFGELVTENCGNCDICKNPPTFFDGTILAQKALSAITRLKESEPL
AVIVDFLRGSRNAYIYEKNYQTLKTYGIGDDVSWYDWNQYLIQLINLGYCEIAFHQHNKI
LLTPFAKKVLFEGEKVKLTTVVKKVIDKNEIKEAKTKTAKNSLFETLRKLRYEIAKEEEV
PAYVIFSDASLRQMEVLRPMTDEEFLAVEGVGKAKLEKYGTEFINAIIEFQRNKSVVKKE
KKDNTYKKTLELFQNGLSVKEIAEQRNLGETTIISHLAKLYVDGNDINLSQFVSDDEILN
IEKAQIELENPNALRPYFEYFEEKMSYDKIRFGLAFLERKNQTI
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgacttcagaaatattacacgcgactttaaaagaaaattttggttttgaaaaattcaga
ccaaatcaggaaactataataaatactattctttctgggcaagatacattagctattatg
ccaacaggaggtggaaaatctatttgttttcagcttccagctttagttcttccaggaatt
actattgtaatttctcctctaattgcattgatgaaagatcaagtagatagtttaaaaacc
aacggaatttctgcttgttttattaatagttcacaatcatctcaagaacagcaatattac
attgataatttaaaatcgaatacttttaaacttgtctatattgctccagaaagtctttct
tatttagatatggcttttaatgaattgaatattagcttaatagcaatagacgaagcgcat
tgtatttcttcttggggacatgactttaggccagcgtatacaaatctgggatatttaaaa
aaccgcttcccttccactccagttttggctttaacagcaactgcagataaagcaacgcgt
accgacattgtaaagcaattaaatttaaagaaacccaaaacttttatcgcttcgtttgat
cgaaaaaatctgagtttagaagttcgtccagctttagatcgtgtcaaacagattattgat
tttattgaagataaaccaaatgaatctggaattatttattgtctaagtcggaaaacgact
gaagagcttgctgaaaaattaaagaaaaatggtatttctgcaaaagcatatcacgctggt
ttagacaatgaaactcgagctaaaactcaagatcattttattaatgatgattgccaagta
gtttgcgccacaattgccttcggaatgggaattgataaatcgaatgttcgttgggttatt
cattataatcttcccaaaaatattgaaggttattatcaggaaattggccgcgctggtcgt
gatggtttaccggcagaaactgttctttttgaaagttatgcagatgtaattcagcttcaa
aagtttgcgtcagaaggtttaaattctgatattcagctagcaaaactagatcgcatgaaa
caatacgcggacgctgttagctgccgaagaaaaattctgctttcatattttggagaattg
gttaccgagaattgcggaaactgcgatatttgcaaaaatcctccaacttttttcgatggg
acaattctcgcgcaaaaggcattgtcagcaattactcgtttaaaagaatctgagccttta
gctgtaattgtcgattttttgcgaggctcgagaaacgcgtatatctacgaaaaaaattat
caaacgctaaaaacgtacggaattggcgatgatgtttcttggtacgactggaatcaatat
cttattcaattaataaatttaggttactgcgaaattgcttttcatcaacacaataaaatt
ctccttacccctttcgccaaaaaagttttgtttgaaggcgaaaaagtaaaacttacaact
gttgttaaaaaagtaattgacaaaaacgaaattaaagaagccaaaacgaaaacggccaaa
aattctctttttgaaacacttcgaaaattacgttatgaaattgccaaagaagaagaagtt
cccgcttatgtaatttttagtgatgcttcattaagacaaatggaagttttgagaccaatg
acagacgaagaatttctcgctgttgaaggtgttggaaaagcaaagctagaaaaatatgga
accgaatttattaatgcaataattgaattccaaagaaataaatcagttgttaaaaaagaa
aaaaaagacaatacttataaaaaaactcttgagttatttcagaatggactttctgtcaaa
gaaattgctgaacaacgaaatttaggagaaacaacaattatttcccatttggcaaaatta
tatgtagacggcaatgatataaatttgagtcaatttgtttcagatgatgaaattttgaat
attgagaaagctcaaattgaattagaaaatccgaatgcattaagaccttactttgaatat
tttgaagaaaaaatgtcttatgataaaattcgatttggattggcatttttggagagaaag
aatcaaacaatttaa
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