Flavobacterium sp. SLB02: GIY83_02075
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Entry
GIY83_02075 CDS
T10548
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
flz Flavobacterium sp. SLB02
Brite
KEGG Orthology (KO) [BR:
flz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
flz03016
]
GIY83_02075
Enzymes [BR:
flz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GIY83_02075
Transfer RNA biogenesis [BR:
flz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GIY83_02075
Prokaryotic type
tRNA splicing ligases
GIY83_02075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QGK72899
LinkDB
All DBs
Position
466075..467496
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AA seq
473 aa
AA seq
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MNTQINGTDILELGFPEGKIIGIALKINSKRHGLKRDEMITNFKNVLETPENYIDDAIFS
KLAIALIEKANEKPEDFIALNQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPD
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIAEDFYFENEAKFKKELIANSI
FGAGHGFHGQYKSDHAVLENDAFNMTPFVKHLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DTVLNIPKGKYVALLTHSGSRGMGATIAGHYTKMAKDVCKLPEVAKNLAYLDMNSQLGQE
YWMAMNLAGDYASACHEIIHNKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGAT
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTQAIKNITKTEMKSILQ
YHGVTLIGAGLDEAPMVYKDINQVMEAQQDLVDVVAKFTPKLVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaatacacaaataaacggtacagatatactagaattaggattccctgaaggaaaaata
atcgggattgccttaaaaataaatagtaaaagacacgggttgaagcgtgatgaaatgatc
accaatttcaagaacgttcttgaaacacctgaaaattatatagacgatgctatttttagc
aaactggcaattgctttgatcgaaaaagcaaatgaaaaaccagaagattttatcgcatta
aaccaaaacccgaatgcatattctgcttacggattagatcatatcgaagacggagcgaga
aaacaaatggaagtagccatgaaattgcccgttaccgttgccggagctttaatgccggat
gcgcaccaaggttacggattgccaattggcggggttttagcgactaaaaatgctattatt
ccgtatggagttggggttgatattggttgtcgaatggcgttatcggtttatgatattgca
gaagatttttactttgaaaacgaagccaaattcaaaaaagaattaattgccaattcgatt
tttggagcaggtcacggttttcatggacaatacaaatcagatcacgcggttttagaaaac
gatgcttttaatatgactccgtttgtgaagcatttaaaagataaagcctggtcacaattg
gggtcttcgggaggtggaaatcactttgtcgaattcggaatcatggaatttgcaaaagac
gatacggttttaaatatcccaaaaggaaaatacgtggctttgttaacgcattctggttca
cgtgggatgggtgccacaattgccggacattatactaaaatggcaaaagatgtttgtaaa
cttccggaagtggctaaaaatttagcctatttggatatgaactcccaattgggtcaggaa
tactggatggcgatgaatttggcgggagattacgcttcggcttgtcatgagattatccat
aacaaaatggaacgcgctttgggagcaacgattttagccaaagtcgaaaaccatcataat
tttgcctggaaagaaatctggaacggagaagaagtgatcgtgcatagaaaaggagcaact
ccagccggaaaaggcgttatgggaattattccgggaagtatgaccgcgccgggatttttg
gtgagaggaaaaggcgaggagaacgccataaactcagcttcgcatggagcaggaagacaa
atgagccgaactcaagccataaaaaacattactaaaaccgaaatgaaatcgattttgcaa
tatcacggggttacgcttattggagcaggtcttgacgaagccccaatggtctataaagat
atcaatcaggtgatggaagcgcaacaggatttagttgatgtcgtggcgaagtttacccct
aaattggtgagaatggcagatgacggaagtcgagaggattaa
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