Flavobacterium sp. SLB02: GIY83_12455
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Entry
GIY83_12455 CDS
T10548
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
flz Flavobacterium sp. SLB02
Brite
KEGG Orthology (KO) [BR:
flz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
flz03009
]
GIY83_12455 (rlmD)
Enzymes [BR:
flz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GIY83_12455 (rlmD)
Ribosome biogenesis [BR:
flz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GIY83_12455 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
FtsJ
PCMT
N6_N4_Mtase
PabTrmU54_TRAM_dom
Alginate_lyase2
Methyltransf_11
Methyltransf_ANTKMT
UPF0020
Chromo_shadow
Motif
Other DBs
NCBI-ProteinID:
QGK74843
LinkDB
All DBs
Position
3482168..3483580
Genome browser
AA seq
470 aa
AA seq
DB search
MGRKNTDKVVFHQIQVLDAGAKGVSVAKAPDGKVIFIPNVVPGDVVDVQTFKKRKAYYEG
KAVKFHELSEHRIEPICDHFGVCGGCKWQNMKYSQQLYYKQNEVKNHLQRIGKVELPEFE
TILGSEKQFFYRNKMEFSFSNSRWLTEKEIESTEDLGNRNALGFHIPKMWDKILDIQKCY
LQEDPSNAIRNEIRDFANANNLAFFNPREQSGLLRTFMIRTASTGEIMVLIQFYENDKKN
RELLLDHLYEKFPQITSLQYVVNSKQNDTIYDQNIKLYKGRDYILEEMEGLKFSINAKSF
YQTNSDQAYELYKITRDFAGLSGNETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILD
AKANAERNNITNCEFFVGDMKVVFNESFIAEHGKPDVIITDPPRDGMHAAVIDQILKIAP
KKVVYVSCNSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLLELR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaaaaatacagacaaagttgtctttcatcagattcaggttcttgatgccgga
gcaaaaggtgtatcagtagcaaaggctcctgacggaaaagtaatctttataccgaacgtg
gttccgggtgatgttgttgacgttcaaactttcaaaaaaagaaaagcctattatgaaggc
aaagccgtaaaatttcatgaattatcagaacaccgcatagaacctatatgcgatcatttt
ggtgtttgtggaggttgcaaatggcaaaatatgaaatacagccaacagttgtattacaaa
caaaacgaagtaaaaaatcatttgcagcgtataggaaaagtagaactacctgaattcgaa
actattttaggttctgaaaaacaatttttctacagaaataaaatggaattttcgttttct
aacagtcgctggctaacagagaaagaaatagaaagcactgaggatttaggaaacagaaat
gctttaggatttcatatcccgaaaatgtgggataaaattcttgatattcaaaaatgttat
ttacaagaagatccgtctaatgccattagaaatgaaattagagattttgctaacgcaaac
aatttagctttctttaatccaagagagcaatccggtttattaagaacttttatgattcgt
acagcttcgactggcgaaatcatggttttgattcagttttacgaaaatgacaagaaaaat
cgtgaattgcttttagatcatctttatgagaagtttccgcaaattacttcgttacaatat
gtcgtaaactccaaacaaaacgacactatttacgatcagaatatcaaactatataaaggt
agagattatatcctggaagaaatggaaggtttaaaattcagcatcaatgctaaatctttt
tatcaaacaaattctgatcaggcgtatgaattatacaaaataacacgtgatttcgccgga
ctttcgggcaacgaaaccgtttatgatttatataccggaaccggaactattgcacaattt
gtttctaaaaaagcaaaaaaagtaattggtgtagaaagtgttcccgaagcaattttagac
gctaaagccaatgcagaacgcaataatataacgaattgtgagttttttgtaggtgatatg
aaagttgttttcaacgaaagcttcatcgcagaacatggcaaaccggatgttattattaca
gatccaccaagagatggtatgcacgccgcagttatcgatcaaatcctgaaaattgctcct
aaaaaagtagtttatgtaagttgtaattcagcaacacaagcacgtgatttagctttaatg
gacgaaaaatataaagttacacgcgtgagaccggttgatatgttcccgcaaacgcatcat
gtcgaaaatgttgtacttttagaacttcgctaa
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