Flavobacterium sp. SLB02: GIY83_12925
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Entry
GIY83_12925 CDS
T10548
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flz Flavobacterium sp. SLB02
Pathway
flz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GIY83_12925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flz03019
]
GIY83_12925
03009 Ribosome biogenesis [BR:
flz03009
]
GIY83_12925
Enzymes [BR:
flz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GIY83_12925
Messenger RNA biogenesis [BR:
flz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GIY83_12925
Ribosome biogenesis [BR:
flz03009
]
Prokaryotic type
rRNA helicases
GIY83_12925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGK74934
LinkDB
All DBs
Position
3587901..3589823
Genome browser
AA seq
640 aa
AA seq
DB search
MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP
LIQKIDADNKNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIK
RGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKST
WLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATD
VAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIERI
IKQKFEEKTIPSGIEICEIQLLHLATKIKDTEVDHEIDNYLPAINNVLEDLSKEELIKKM
VSVEFNRFIAYYKKNRDISAQSGERRERSDSEPREFNNNGAVRYFVNIGSRDNFDWMSLK
DYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTEKVMEVLNNVQLEGRRINVEISKNDGG
GRRDHNGRSGGGRSSGGPRREGSGGGSFGPRREGSGGGFRSDRNSAPREGGFRSDRNSSA
PKREGGFRSSAPRSEGSSDRAPRRSESFGDSPRPRRPRRD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaacaattaggattgaatgaatcgttactgaaggcgattttagatcta
ggatttgagaatccgtcagaagtacaggaaaaagcgattcccctattattggaaaaagac
acggatatggttgcgttggctcagacagggacagggaaaacggcagctttcggttttccg
ctaattcaaaaaattgatgctgacaacaaaaatacacaagcattagttttatcgccaaca
cgagaactttgtttacagattaccaacgaacttaaaaactactcaaaatacgagaaaggt
attaatgtggtagcagtttacggcggggctagtattacagagcaagctagagacattaaa
agaggagcacagattattgtggctactccggggagaatgcaagacatgatcaacagaggt
ttggttaacattaaaaatatagattactgtattcttgatgaggctgacgaaatgctgaac
atgggattttatgaggatatcgtatcgattttatcagatactccagatcaaaaaagtaca
tggttgttctctgcaactatgccacaagaggttgccagaattgcaaaacaattcatgagc
gaaccggttgaaattactgttggagctaagaactcaggttctgcaacagtttctcacgaa
ttttatttagtaaatgcacgtgatcgttacgaagctttaaaacgtttagccgatgcaaat
ccagatattttctctgtggttttctgtcgtactaaaagagacacacaagctgtagctgaa
aaattaattgaagatggatacagcgctgctgcattgcacggagatttatctcaggcgcaa
cgtgatggtgtaatgaaatctttccgtggaagacaaattcagatgcttgttgctactgac
gttgctgcacgtggtattgacgttgataatattactcacgtagtaaattaccaacttcct
gacgaaattgaaacttacaatcaccgttctggacgtactggtagagctggaaaattagga
acttctattgtaattgttacaaaaagtgagttgcgtaaaatttcttctatcgaaagaatc
atcaaacaaaaatttgaagaaaaaactattccatccggaatcgaaatttgcgaaattcaa
ttgttgcacttagcaactaaaattaaggatactgaagttgatcatgaaattgacaactat
ttaccagcaattaacaatgttcttgaagatttatctaaagaggaattgattaagaaaatg
gtatctgtagaatttaatcgttttatcgcttactataaaaagaacagagatatctctgct
caatctggagaaagacgtgaaagaagtgattctgagccaagagaattcaataacaacgga
gcagttcgttactttgtaaacattggttcaagagacaacttcgactggatgtctcttaaa
gattatttgaaagaaacattagacttaggtcgtgatgacgttttcaaagtagatgtaaaa
gaaggtttctctttctttaacactgatcctgagcacactgaaaaagtaatggaagtatta
aacaacgtacaattagaaggacgtcgtattaatgttgaaatttctaaaaatgatggtggt
ggaagacgtgaccataacgggcgttctggtggcggaagaagttctggaggaccaagaaga
gaaggttctggcggaggaagcttcggaccaagacgtgaaggttctggtggaggattcaga
agcgacagaaactctgctcctagagaaggtggtttcagaagcgacagaaactcatctgct
ccaaaaagagaaggtggtttcagaagttcagctccaagaagcgaaggtagttcagacaga
gctccaagacgttctgaaagctttggtgattcaccaagaccaagaagaccaagaagagac
taa
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