Flavobacterium sp. SLB02: GIY83_21840
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Entry
GIY83_21840 CDS
T10548
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
flz Flavobacterium sp. SLB02
Pathway
flz03410
Base excision repair
flz03430
Mismatch repair
flz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
flz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GIY83_21840 (recJ)
03430 Mismatch repair
GIY83_21840 (recJ)
03440 Homologous recombination
GIY83_21840 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
flz03400
]
GIY83_21840 (recJ)
DNA repair and recombination proteins [BR:
flz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GIY83_21840 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GIY83_21840 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GIY83_21840 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
LsmAD
Motif
Other DBs
NCBI-ProteinID:
QGK76615
LinkDB
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Position
complement(5727394..5729094)
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AA seq
566 aa
AA seq
DB search
MRWTLKTKPSEDKVKHLAQALNVEDFVATLLIQRGIETFEDAKNFFRPSLEHLHDPFLMK
DMDKAVARIELAIENQENILVFGDYDVDGTTAVSLVSAYLKSHYPNIATYIPDRYAEGYG
ISFKGIDFADDNGFSLIIALDCGIKSIDHIAYAKEKNIDFIICDHHRPGEFLPDAVAILD
PKREDCFYPYDELCGCGVGFKLIQALGTNRNETIEDLVPYLDLVATAIAADIVPITGENR
VLAYFGLQVINSDPRPGIKALVHQVKKKTLDITDVVFIVSPRINAAGRIKHGNHAVELLT
EFNFEQAQQFASEIEQYNSDRKDLDKQITKEAFQQIIQNQEEDRYSTVVFQEDWHKGVIG
IVASRLIETYYRPTLVFTKSGDKYAASARSVKGFDVYNALDACSQHLEQFGGHMYAAGMT
LKAENYKTFKDAFEKQVEETILPEMRTPEIEVDAEINFSDITPKLVRILKQFEPFGPLNM
TPVFMTKDAKDTGYAKTLGSEDEHLRLFIKQNNSDGIAAIGFGLGKKINIVKNQNPFQLA
YSLAENEWNGSVSTQLMLKDIRTNDN
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacattaaaaacaaaaccttctgaagataaagtcaaacatttggcgcaagcc
ctgaatgtagaagattttgtagcaacccttttgattcagcgtggcattgaaactttcgaa
gatgccaaaaatttctttcgcccttcgttagaacatctccatgatccgttcttgatgaaa
gacatggacaaagcggttgcccgaatagaattggccatcgaaaatcaggaaaacatcttg
gtttttggcgattatgatgtcgacggaacaacggccgtttctttggtttcggcttattta
aaatcgcattatcctaatattgccacttatattccggatcgttatgccgagggttacgga
atttcttttaaaggaattgactttgccgatgataacggtttttcgctaatcattgcttta
gactgcggcataaaatcaatcgatcatatcgcctacgcgaaagaaaaaaacatcgatttt
attatttgtgatcaccacagacccggagaatttcttccggatgcggttgcgattctggat
ccaaaaagagaagattgcttctatccttatgatgaattgtgcggttgcggagtcggtttt
aaattgattcaggctttaggaacaaacagaaacgaaacaatagaagatttagttccgtat
ctggatttagttgccacagcaattgcggccgatattgtaccgattacaggtgaaaacaga
gttttggcttattttggattgcaggttatcaactcagatccgagaccgggaattaaagct
ctggtacatcaggtcaaaaagaaaacattggatattactgatgttgtttttattgtttca
ccaagaataaatgctgccggaagaatcaaacacggaaatcatgcggttgaattattgacg
gaatttaatttcgaacaagcacaacaattcgcatccgaaatagaacaatacaactctgac
cgaaaagatctggacaaacaaattaccaaagaagcttttcagcaaattatacaaaatcag
gaagaagaccgatattcgaccgtagtatttcaggaagactggcacaaaggcgtgatcggg
attgtagcttcgaggctaatcgaaacctattatcgtcccactttggttttcacaaaaagc
ggcgataaatatgccgcttctgcaagatctgtaaaaggatttgatgtttacaatgccctt
gatgcctgttcacaacatttagaacaatttggaggccatatgtacgctgcaggaatgacc
ctcaaagccgaaaactataaaacatttaaagacgctttcgaaaaacaagtcgaggaaacc
attttacccgaaatgcgaactccggaaatcgaagtcgatgccgaaattaattttagtgac
attactccaaaacttgttcggattttaaaacaatttgaaccttttggccctttgaatatg
acgcctgtttttatgaccaaagatgcaaaagacacgggttatgccaaaactttgggttca
gaagacgaacatttgagactttttataaaacagaacaattcagacggaattgccgccata
ggttttggacttggaaaaaaaataaacatcgtaaaaaatcaaaatccttttcaattagcg
tattcattggctgaaaacgaatggaacggcagcgtttctacccaacttatgcttaaagac
attagaacaaatgacaactaa
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