Flavobacterium sp. SLB02: GIY83_21885
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Entry
GIY83_21885 CDS
T10548
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
flz Flavobacterium sp. SLB02
Pathway
flz02020
Two-component system
flz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
flz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GIY83_21885 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GIY83_21885 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
flz03021
]
GIY83_21885 (rpoN)
Transcription machinery [BR:
flz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GIY83_21885 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
Motif
Other DBs
NCBI-ProteinID:
QGK76624
LinkDB
All DBs
Position
complement(5734154..5735614)
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AA seq
486 aa
AA seq
DB search
MLKQFLNLKLSQKLSPQQIQLMKLIQLPTQAFEQRLLEEMNENPALEAGKEDEYEADEFA
NEEYDDYDDAESDRIEADDINIDEYLSDDDTPDYKTQVNNYSEDEERETPFASPISFHQD
LINQLNTFILNDEEREIAEFLVGSIDDMGYIRRSVPDIVDDMAFTQGIYTDEKMVEKMLQ
VIHELEPSGVGARDLQECLLLQLKHKTPTEYVDLAIDIIENQFDAFTKKHYDKLLQKYGV
SNEQLKKAIHEIERLNPKPGGSYTGNNKVTENVVPDFAIRIVDGELELTLNGRNAPSLHV
SKDYQEMMQTYKDSRDKSSAQKDAVQFIKQKLDSAKWFIDAIRQRQETLFVTMNAIMHYQ
EEYFLDGDETKLKPMILKDIADMVGLDISTISRVANSKYVETPYGTKLIKEFFSEAMKND
QGEDVSTLEIKKILKNTIEEEDKKKPLPDDQLAEILKEKGYPIARRTIAKYREQLDIPVA
RMRKKI
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcaatttttaaatttaaaattatcccaaaaattatctccacagcaaattcag
ctgatgaagttaattcaattgcctacgcaagcttttgagcaacgtttattagaagaaatg
aacgaaaatccagcccttgaagcaggaaaagaagatgaatacgaagcggatgaattcgca
aatgaagaatacgacgattatgatgatgcagaatctgacagaatcgaagcagatgacatc
aatatcgacgaatatttaagcgacgacgatactccggattataaaactcaggtgaataat
tatagtgaagatgaagaaagagaaactccttttgcttcaccaattagttttcatcaggat
ttgatcaatcagttgaatacttttatcttgaatgatgaagaacgcgaaatagcggaattc
cttgttggaagtattgacgatatgggttatatccgcagaagcgttccggatatagttgac
gatatggcttttactcagggtatttatacagatgagaaaatggtcgagaaaatgcttcag
gtgattcacgaactggaaccttcaggggttggagcgcgtgatttgcaggaatgtttgtta
ttacaattgaagcataaaaccccgactgaatatgttgatttagcaattgatattatcgaa
aatcagtttgatgcttttaccaaaaaacattatgacaaactgcttcaaaaatatggtgtt
tcgaatgaacagctaaaaaaagcgattcacgagatcgaaagattaaacccgaaaccagga
ggatcttacaccggaaacaataaagtaacggaaaatgtagtccctgatttcgcgattaga
attgttgacggcgaactggaactgactttaaacggaagaaatgctccttccctgcacgtt
tctaaggattatcaggaaatgatgcagacatataaagattctcgtgataaatcatcagct
caaaaagatgcggttcagtttatcaaacaaaaactggattcggctaaatggtttatcgat
gcgatcaggcaacgtcaggaaacgctatttgtgaccatgaatgcgattatgcattatcag
gaagaatatttcttagatggcgacgaaaccaagctaaaaccaatgatcttaaaagacatt
gcagatatggttggtttggatatttcgacgatttcgcgggtagccaacagtaaatatgtt
gaaacgccatacggaacaaaattaatcaaggagtttttctctgaagcgatgaaaaacgat
cagggtgaagatgtttcgactttagaaatcaaaaagattcttaaaaatacgattgaagaa
gaagacaaaaagaaacctttaccagacgatcaactggcagaaattctaaaagaaaaaggt
tatccgattgccagaagaactatcgcaaaataccgtgaacagctggatattccggtagca
agaatgagaaagaagatttaa
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