Flavobacterium sp. SLB02: GIY83_24035
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Entry
GIY83_24035 CDS
T10548
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
flz Flavobacterium sp. SLB02
Pathway
flz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GIY83_24035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flz03019
]
GIY83_24035
03400 DNA repair and recombination proteins [BR:
flz03400
]
GIY83_24035
Enzymes [BR:
flz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GIY83_24035
Messenger RNA biogenesis [BR:
flz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GIY83_24035
DNA repair and recombination proteins [BR:
flz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GIY83_24035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
DnaD_N
DUF2582
DUF7343
MarR
HTH_9
Motif
Other DBs
NCBI-ProteinID:
QGK77025
LinkDB
All DBs
Position
complement(6198549..6200444)
Genome browser
AA seq
631 aa
AA seq
DB search
MPEAQEFLLKYWKHNSFRPLQKEIIDSVLDGQDTFALLPTGGGKSICFQVPAMMKPGICL
VVSPLIALMKDQVANLQKREIKAIALTGGIHTEEIIDLLDNCQYGNYKFLYLSPERLQSD
WILERIKNLPINLIAIDEAHCVSQWGHDFRPAYLKISELKKHFPKIPFLALTATATPRVI
EDIKTELGLKAPIIFQQSFERKNIAYMVFEVEDKLYRTEQILKKNPQPSIIYVRNRKSCL
NMSTQLQSLGFKATYYHGGLSSKEKDKNMQLWMSEQAQVIVATNAFGMGIDKDNVKTVIH
TQLPENIENYYQESGRAGRNGEKAFSVVLTNSSDSIQSEQQFLSILPDKKFLNTMYVKLC
NYFQIAYGEGLDDSFSFKLNHFCQKYDFPTLKTYNALQFLNQQGIITMSQEFSEKITMQF
LIESKEVIRYMSLNSNDEEIILAILRTYPGIYEMKMPFNISLIAKKSNHTEAQVSAVLEK
LKEKEIIEYKSKNNDATILFNEVREDNLTINRVSKYLEKQNQLKKDQLLSVLHYIKDNKT
CKNRLILDYFGEETTENCGVCSYCITQKGKITEADSIADKILHLLKTAALTSREIETKIK
LDANDVILALQELLENNYITIQANNKYTLKL
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgccagaagcacaagaatttcttttaaaatactggaaacacaacagttttagaccgttg
caaaaggagattattgactcggttttggatggtcaggatacttttgccctattgccaacc
ggcggtggaaaatcgatttgttttcaggttccggccatgatgaagccgggtatttgcctg
gtcgtttcgcctttgatcgctttgatgaaagatcaggtggcaaatttgcaaaaaagggag
attaaagcaattgcgcttacaggcggaattcataccgaagaaatcattgatcttctggac
aattgccaatacggaaattacaaattcttatacctttccccggaacgacttcagtctgac
tggattttggaacgcataaaaaatcttccaataaatttaattgcaattgatgaagcgcat
tgtgtttcacaatggggacatgattttcgtccggcatatttgaagatttcagaactaaaa
aagcattttccaaagattccgtttttagctttaacagctacagcaactccaagagtcatt
gaagatattaaaactgaattaggattgaaagccccaataatttttcagcaatcttttgaa
agaaaaaatattgcctatatggtttttgaagtcgaggacaaattgtatcgcacagaacaa
atcttaaagaaaaatccgcagccttctattatatatgtacgaaatagaaaatcgtgcctc
aatatgtcgacgcaattacaatccttaggattcaaggcaacttattatcacggtggactt
tcatcaaaagaaaaagacaaaaacatgcaattgtggatgtctgaacaagcgcaggtaatt
gtagccaccaatgcgtttggaatgggaatcgacaaagacaatgtaaaaacggttattcat
acccagcttcctgaaaatatagaaaactattatcaggaatccggaagagcgggacgaaat
ggtgagaaagctttttctgtggtattgacaaattcgtcagacagcattcagtctgaacag
caatttttaagtattttaccggataaaaagtttctgaatactatgtatgtgaaactttgc
aattattttcagattgcctatggcgaaggtttagacgattctttttcgtttaaactgaat
catttttgccagaagtacgacttccctacccttaaaacctataatgctctgcaattttta
aaccagcagggaattattacgatgtctcaggaattctctgaaaaaattacgatgcagttt
ttaattgaatcgaaagaagtaattcgctatatgagtctgaactctaatgacgaagaaatc
attctggcaatcctgagaacttatccggggatttacgaaatgaaaatgccatttaatatt
tcgctaattgccaaaaaatcaaatcataccgaagcacaggtttctgctgttttagaaaaa
ctaaaagagaaagaaattattgaatacaaatctaaaaataacgacgctactatattattt
aatgaagttcgcgaagataatcttaccataaacagagtttcaaaatatctcgaaaaacaa
aatcaacttaaaaaagaccagcttttatctgttctgcattatataaaggacaataaaacc
tgcaaaaaccgattgatcctggattattttggagaagaaactacagaaaattgcggagtc
tgctcctattgtattactcaaaaaggaaaaattaccgaagccgattcgattgcagataaa
attctgcacttattaaagacagcagcgttgacttcaagagaaattgaaaccaaaataaaa
ttagatgcaaatgatgtaattttggcacttcaggaattacttgaaaacaattatatcacc
attcaggcaaacaataaatacactttaaaattataa
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