Finegoldia magna: FMG_0481
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Entry
FMG_0481 CDS
T00661
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fma
Finegoldia magna
Pathway
fma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FMG_0481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fma03400
]
FMG_0481
Enzymes [BR:
fma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FMG_0481
DNA repair and recombination proteins [BR:
fma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FMG_0481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
RecG_dom3_C
IstB_IS21
Microp_apicomplexa_15
DUF3213
Motif
Other DBs
NCBI-ProteinID:
BAG07899
UniProt:
B0S0H3
LinkDB
All DBs
Position
539739..543245
Genome browser
AA seq
1168 aa
AA seq
DB search
MNFLTKIYEDNTEFQGYLDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDN
MRARNLTEYLNDIEENICEFFPSRELNFYNAKSLDDNAEDQRVNVLFKLLNNEKFIIVTT
FDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIESKGQFAIRGGIV
DIFPVHSRFPVRIELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSELIIEDSKKESIIN
SIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYIRSDLEYEIDLVSCFLTKKDYDTVFDYF
ADDTIMMIEDLSRCYDIYKEKEKRFLEDFVYLVEKGEVLSKHEQSLIPISDILKFIKAKT
SVNITSLVKRTRLIESNAMYQLKTLEAPNFNKNIDSLVENIKSNSLRGFKQIVFAANVER
KNMLKDLFLTNGIPTLEAEDYNANIKSSQVLITQKNLPNGFEIKDPKYLIITYKEIFGRE
KQLRKRKKKKSTGQDIVNYSDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKA
NDRLMIPTDQMNLVQKYIGGGNVKKPSLNKLSGNDWAKAKQKAKKSVDEMADDLVELYSK
RAKLKGYQFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMESDRPMDRLLCGDVGYGK
TEVAIRACFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPIRVEMMSRFVSPARQKQ
IMKDVQRGLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTL
SATPIPRTLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYF
VYNRIEDIDQMEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETG
LDIQNVNTMIIYNADKMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIK
DFTEFGSGFKIAMRDLELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGETISEN
KNTVIIEIKVNGYIPEDYISENETKIDIYKKIASIQDEDDYSEIIDELIDRFGDVPKPIV
NIMDVSIIKAFCARLSIESIKEIKGELFLQFSSPDKISLEKLKYLTENYKKEMRFDLSEK
PKIILGFEDKNLRDPIEVLSILLKDNEK
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaattttttaacgaaaatttatgaagataacacagaatttcaaggttatttggattct
ttgtcagccaataactcgtcgatttacattcacggtgttattaaggaagcttttgcaagt
ttcgtgtatgcgacatcaaaaaacatcaacaaacctcttgtagtagtcgtagaagataat
atgagagcgagaaatctgacagaatatctgaatgatattgaagaaaatatctgtgaattt
ttcccgagcagagaacttaacttttacaatgcaaaatcacttgatgataatgcagaagat
caaagagttaatgtgttattcaaattgttgaacaacgaaaaatttattattgttacaaca
tttgatgctttaacgaagaaaatcacgaaaaaatcagtagcaaaaaaatacgcctttaca
attaaagacactgatttgataaatttagaagaacttcaagaaaaattgagggcgttgaaa
tacgaaagagtagacactattgaatccaagggacaatttgctattagaggtggaattgta
gatattttccctgtacacagcagatttcctgtaagaattgaattattcgatgatgaaata
gattcgatgagatttttcgaagtatcaactcaaagatcgattgaagattgtaaattcgta
gatattattagctgcagcgaacttattattgaagattcaaagaaagaatccattatcaat
tctattcagaaaaatttggacaaaagagtcgatcatccgatttttggagaaaatgtagat
aatgtcaaggacaaatttgaaaagctgatggaatatatcagaagcgatttggaatatgaa
atcgacttggtatcgtgttttttaactaaaaaagattatgatactgtgtttgattatttt
gcagatgacactatcatgatgatagaagatttgtccagatgctatgatatttacaaggaa
aaggaaaagagatttttggaagatttcgtgtatttggttgaaaaaggagaagttttatcc
aagcacgaacaatcgcttattccaatttccgatattttgaaatttataaaagcaaaaaca
tcggtaaatattacaagtttggtcaaaagaactagacttatcgaatcgaatgcgatgtat
cagcttaagacattggaggcgccaaactttaataaaaatatcgacagtttggttgaaaat
atcaaatccaacagtttgagaggatttaaacaaatcgtatttgctgcaaatgtcgaacgc
aaaaacatgctcaaggatttgttcttaaccaacggtattccaactcttgaagctgaggat
tacaatgcgaacattaaatcttcgcaggttttgattactcagaaaaatttgccaaatggt
tttgaaataaaagatcctaagtatttgataattacttacaaggaaattttcgggagagaa
aaacaactaagaaaacgcaagaagaaaaaaagcactggtcaggacattgtcaattattct
gatttgaacatcgatgattatgtggttcatgaaaatcacgggattggtcagtacaaggga
atcgaaaaaatcgatgtaaatggaattcaaaaagattacattgtaattcaatataaagct
aatgataggctgatgattccaaccgatcaaatgaatttagtccaaaaatacatcggggga
ggcaatgtcaaaaagccttcgttaaataaactaagtggaaatgattgggcaaaggcgaaa
caaaaagccaagaaatcagtcgacgaaatggcggatgatttggttgaattgtattccaaa
agagccaaattaaaagggtatcagttctcacaagataccgaatggcaaagagaatttgaa
gattctttcccttatgaagaaacagattcacaagtacgatccattgaagaaatcaaagcc
gatatggaatcggataggccaatggacaggttattgtgtggggatgttggctatgggaaa
acagaagttgctatcagagcttgttttaaagcgataatggatgggaaacaagttgcgttt
ttagttccgacgacgattcttgcgcagcagcatttcaatacaatcaaagaacgattcaga
gattatccgataagagttgaaatgatgagtagattcgtttctcctgcacgtcaaaaacaa
ataatgaaagatgtgcaaagaggtcttgtagatttattggttggaactcataggattttg
tcgaaaaatttgaagttcaaagatttgggattattagtaatcgacgaagagcaaagattt
ggtgtgagacacaaagaaaaattaaaatctatgagagaaaacgtagatgtgctaacactt
tcagcgactccaattcctagaactttacaaatgggattgactggaataagagatatgagt
ttattagaagaaccgccagaagacagaactcctatatcaacttatgttacagagtacaat
ccaagcttgataagagatgcaataatcagagaacttgaccgcggcggacagatttatttt
gtgtataatagaatagaagatatcgatcagatggaattcaaattaaaagaattagttccg
gaattaaacatagcgatagcacatggtagaatgaacgaaaaagagctagaaaatgtaatg
ctcgactttcaagatggaatttacgatttgctattgtgcacaactattatagaaacaggt
cttgatatacaaaatgtcaacacaatgataatttataatgcagataagatgggtttgtcg
caattgtatcaattaaagggacgtattggtcgatctgatagaacttcgtttgcttatttc
acatacgaaggacaaaaatcattaactgaaatttccgaaaaaagacttatggctataaaa
gattttacggaatttggttctgggtttaaaatagcaatgagagatttggaacttagagga
gctggaaatcttttgggagaaagccaacacggtcacatcgcaaaaatcggttatgatttg
tatgtgaagcttttggaacaagctgtcagagaagctaagggtgagactatttctgaaaat
aaaaatactgttattatagaaatcaaagtcaacggatacattccagaagattatatttct
gagaatgaaacaaagattgatatctacaaaaaaatcgcatctattcaagatgaagatgat
tattctgaaataattgatgaattaatcgacaggtttggagatgttcctaagcctatcgtt
aatataatggatgtatctataataaaagcgttttgtgcgagattatccattgaaagtata
aaagaaataaagggagaacttttcttgcaattttcttctcctgacaaaatttcattagaa
aaattaaaatacttgacagaaaattacaaaaaagaaatgagatttgatttgtcagaaaaa
ccaaaaattattttgggatttgaagacaaaaatttgagagatcctatcgaagtattatcg
atacttttgaaggataatgagaaataa
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